Package: scDblFinder
Type: Package
Title: scDblFinder
Version: 1.20.2
Authors@R: c(
    person("Pierre-Luc", "Germain", email="pierre-luc.germain@hest.ethz.ch", role=c("cre","aut"), comment=c(ORCID="0000-0003-3418-4218")),
    person("Aaron", "Lun", email="infinite.monkeys.with.keyboards@gmail.com", role="ctb"))
URL: https://github.com/plger/scDblFinder,
        https://plger.github.io/scDblFinder/
BugReports: https://github.com/plger/scDblFinder/issues
Description: 
    The scDblFinder package gathers various methods for the detection and 
    handling of doublets/multiplets in single-cell sequencing data (i.e. 
    multiple cells captured within the same droplet or reaction volume). It
    includes methods formerly found in the scran package, the new fast
    and comprehensive scDblFinder method, and a reimplementation of the
    Amulet detection method for single-cell ATAC-seq.
License: GPL-3 + file LICENSE
Depends: R (>= 4.0), SingleCellExperiment
Imports: igraph, Matrix, BiocGenerics, BiocParallel, BiocNeighbors,
        BiocSingular, S4Vectors, SummarizedExperiment, scran, scater,
        scuttle, bluster, methods, DelayedArray, xgboost, stats, utils,
        MASS, IRanges, GenomicRanges, GenomeInfoDb, Rsamtools,
        rtracklayer
Suggests: BiocStyle, knitr, rmarkdown, testthat, scRNAseq, circlize,
        ComplexHeatmap, ggplot2, dplyr, viridisLite, mbkmeans
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.2.3
biocViews: Preprocessing, SingleCell, RNASeq, ATACSeq
git_url: https://git.bioconductor.org/packages/scDblFinder
git_branch: RELEASE_3_20
git_last_commit: 474bce8
git_last_commit_date: 2025-02-06
Repository: Bioconductor 3.20
Date/Publication: 2025-02-10
NeedsCompilation: no
Packaged: 2025-02-11 02:52:58 UTC; biocbuild
Author: Pierre-Luc Germain [cre, aut] (<https://orcid.org/0000-0003-3418-4218>),
  Aaron Lun [ctb]
Maintainer: Pierre-Luc Germain <pierre-luc.germain@hest.ethz.ch>
Built: R 4.4.2; ; 2025-02-11 14:24:55 UTC; windows
