Package: scoreInvHap
Title: Get inversion status in predefined regions
Version: 1.28.0
Authors@R: c(person("Carlos", "Ruiz", , "carlos.ruiz@isglobal.org", role = "aut"),
  person("Dolors", "Pelegrí", , "dolors.pelegri@isglobal.org", role = "aut"),
  person("Juan R.", "Gonzalez", ,"juanr.gonzalez@isglobal.org", role = c("aut", "cre")))
Maintainer: Dolors Pelegri-Siso <dolors.pelegri@isglobal.org>
Description: scoreInvHap can get the samples' inversion status of known inversions. scoreInvHap uses SNP data as
 input and requires the following information about the inversion: genotype frequencies in the different
 haplotypes, R2 between the region SNPs and inversion status and heterozygote genotypes in the
 reference. The package include this data for 21 inversions.
Depends: R (>= 3.6.0)
License: file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
Imports: Biostrings, methods, snpStats, VariantAnnotation,
        GenomicRanges, BiocParallel, graphics, SummarizedExperiment
Suggests: testthat, knitr, BiocStyle, rmarkdown
VignetteBuilder: knitr
biocViews: SNP, Genetics, GenomicVariation
git_url: https://git.bioconductor.org/packages/scoreInvHap
git_branch: RELEASE_3_20
git_last_commit: f2fff05
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 05:30:09 UTC; biocbuild
Author: Carlos Ruiz [aut],
  Dolors Pelegrí [aut],
  Juan R. Gonzalez [aut, cre]
Built: R 4.4.1; ; 2024-10-30 16:44:04 UTC; windows
