Package: scp
Title: Mass Spectrometry-Based Single-Cell Proteomics Data Analysis
Version: 1.16.0
Authors@R: 
    c(person("Christophe", "Vanderaa",
              email = "christophe.vanderaa@ugent.be",
              comment = c(ORCID = "0000-0001-7443-5427"),
              role = c("aut", "cre")),
      person("Laurent", "Gatto",
              email = "laurent.gatto@uclouvain.be",
              comment = c(ORCID = "0000-0002-1520-2268"),
              role = "aut"))
Description: Utility functions for manipulating, processing, and
    analyzing mass spectrometry-based single-cell proteomics
    data. The package is an extension to the 'QFeatures' package and
    relies on 'SingleCellExpirement' to enable single-cell proteomics
    analyses. The package offers the user the functionality to process
    quantitative table (as generated by MaxQuant, Proteome Discoverer,
    and more) into data tables ready for downstream analysis and data
    visualization.
Depends: R (>= 4.3.0), QFeatures (>= 1.13.5)
Imports: IHW, ggplot2, ggrepel, matrixStats, metapod, methods,
        MsCoreUtils, MultiAssayExperiment, nipals, RColorBrewer,
        S4Vectors, SingleCellExperiment, SummarizedExperiment, stats,
        utils
Suggests: BiocStyle, BiocGenerics, MsDataHub (>= 1.3.3), impute, knitr,
        patchwork, preprocessCore, rmarkdown, scater, scpdata, sva,
        testthat, vdiffr, vsn, uwot
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: GeneExpression, Proteomics, SingleCell, MassSpectrometry,
        Preprocessing, CellBasedAssays
BugReports: https://github.com/UCLouvain-CBIO/scp/issues
URL: https://UCLouvain-CBIO.github.io/scp
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.1
git_url: https://git.bioconductor.org/packages/scp
git_branch: RELEASE_3_20
git_last_commit: 1faab32
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 05:35:15 UTC; biocbuild
Author: Christophe Vanderaa [aut, cre]
    (<https://orcid.org/0000-0001-7443-5427>),
  Laurent Gatto [aut] (<https://orcid.org/0000-0002-1520-2268>)
Maintainer: Christophe Vanderaa <christophe.vanderaa@ugent.be>
Built: R 4.4.1; ; 2024-10-30 16:44:17 UTC; windows
