# High Throughput Sequencing Cell Authentication Toolkit

## Documentation for package ‘seqCAT’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

seqCAT-package | seqCAT: High Throughput Sequencing Cell Authentication Toolkit
calculate_similarity | SNV profile similarity calculations
compare_many | Comparisons of many SNV profiles
compare_profiles | Binary SNV profile comparisons
create_profile | SNV profile creation
create_profiles | SNV profile creation
filter_duplicates | Variant de-duplication
filter_variants | Variant filtering
list_cosmic | List COSMIC sample names
list_variants | List known variants
plot_heatmap | Plot similarity heatmap
plot_impacts | Plot SNV impact distribution
plot_variant_list | Plot known variants list
read_cosmic | Read COSMIC data
read_profile | Read SNV profile
read_profiles | Read SNV profiles
seqCAT | seqCAT: High Throughput Sequencing Cell Authentication Toolkit
test_comparison | Overlapping and compared SNVs
test_profile_1 | SNV profile 1
test_profile_2 | SNV profile 2
test_profile_3 | SNV profile 3
test_similarities | Collated similarities object
test_variant_list | Modified variant list object
write_profile | Write SNV profile
write_profiles | Write SNV profiles