Package: single
Type: Package
Title: Accurate consensus sequence from nanopore reads of a gene
        library
Version: 1.10.0
Authors@R: 
  c(person(given = "Rocio",
           family = "Espada",
           role = c("aut", "cre"),
           email = "rocio.espada@espci.fr",
           comment = c(ORCID = "0000-0003-3829-473X")))
biocViews: Software, Sequencing
Depends: R (>= 4.0)
Description: Accurate consensus sequence from nanopore reads of a DNA gene library. 
                SINGLe corrects for systematic errors in nanopore sequencing reads of
                gene libraries and it retrieves true consensus sequences of variants
                identified by a barcode, needing only a few reads per variant. More
                information in preprint doi: https://doi.org/10.1101/2020.03.25.007146.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: Biostrings, BiocGenerics, dplyr, GenomicAlignments,IRanges,
        methods, reshape2, rlang, Rsamtools, stats, stringr, tidyr,
        utils
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
RoxygenNote: 7.2.3
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/single
git_branch: RELEASE_3_20
git_last_commit: 00b3c6f
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 05:42:27 UTC; biocbuild
Author: Rocio Espada [aut, cre] (<https://orcid.org/0000-0003-3829-473X>)
Maintainer: Rocio Espada <rocio.espada@espci.fr>
Built: R 4.4.1; ; 2024-10-30 16:48:24 UTC; windows
