# Speedy quality assurance via lasso labeling for LC-MS data

## Documentation for package ‘squallms’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

extractChromMetrics | Extract metrics of chromatographic peak quality
labelFeatsLasso | Label similar chromatographic features in bulk via interactive selection
labelFeatsManual | Label chromatographic features manually one at a time via interactive interface
logModelFeatProb | Model feature quality using a logistic regression
logModelFeatQuality | Turn 0-1 likelihood values into categorical (good/bad) classifications
makeXcmsObjFlat | Make an XCMS object flat
pickyPCA | Perform a PCA on multi-file chromatographic data
updateXcmsObjFeats | Update features in an XCMS object