allelicTDT              Allelic TDT
colEMlrt                EM Likelihood Ratio Test
colGxE                  Genotypic TDT for Gene-Environment Interactions
colGxGPerms             Permutation-Based gTDT for Two-Way Interactions
colPOlrt                Parent-of-Origin Tests
colTDTmaxTest           Maximum Genotypic TDT
colTDTsam               SAM and EBAM for Trio Data
findLDblocks            Identifying LD blocks
getLD                   Computation of LD Measures
getMatPseudo            Generates Case-Pseudo-Control Matrix
lrControl               Control Parameters for Trio Logic Regression
ped2geno                Transformation of Ped-File
plot.LDblocks           Plotting a LDblock Object
plot.getLD              Plotting a getLD or getLDlarge Object
plot.trioLR             Plotting for trioLR Objects
poly4root               Roots of a Fourth Degree Polynomial
print.colGxE            Printing and Storing of colGxE objects
print.trioFS            Printing and plotting of a trioFS object
print.trioLR            Printing of trioLR Objects
probTDT                 TDT on genotype probabilities matrix
read.pedfile            Reading a Ped File
removeSNPs              Remove SNPs or Trios
scoreTDT                Score Tests for SNPs, GxE, and GxG Interactions
tdt                     Genotypic TDT
tdtGxG                  Genotypic TDT for Two-Way Interactions
trio.check              Check Case-Parent Trio Data for Mendelian
                        Errors
trio.data               Case-Parent Trio Data
trio.permTest           Permutation Tests for Trio Logic Regression
trio.power              Power and sample size calculation
trio.prepare            Generate Trio Data Format Suitable for Trio
                        Logic Regression
trio.sim                Simulate Case-Parent Trios
trioFS                  Trio Feature Selection
trioLR                  Trio Logic Regression
vcf2geno                Transformation of VFC File
