Package: BG2
Type: Package
Title: Performs Bayesian GWAS analysis for non-Gaussian data using BG2
Version: 1.8.0
Authors@R: 
  c(person(given = "Jacob",
           family = "Williams",
           role = c("aut", "cre"),
           email = "jwilliams@vt.edu",
           comment = c(ORCID = "0000-0002-6425-1365")),
    person(given = "Shuangshuang",
           family = "Xu",
           role = "aut"),
    person(given = "Marco",
           family = "Ferreira",
           role = "aut",
           comment = c(ORCID = "0000-0002-4705-5661")))
Description: This package is built to perform GWAS analysis for non-Gaussian data using BG2. The BG2 method uses penalized quasi-likelihood along with nonlocal priors in a two step manner to identify SNPs in GWAS analysis. The research related to this package was supported in part by National Science Foundation awards DMS 1853549 and DMS 2054173.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Bayesian, AssayDomain, SNP, GenomeWideAssociation
Imports: GA (>= 3.2), caret (>= 6.0-86), memoise (>= 1.1.0), Matrix (>=
        1.2-18), MASS (>= 7.3-58.1), stats (>= 4.2.2)
Depends: R (>= 4.2.0)
Suggests: BiocStyle, knitr, rmarkdown, formatR, rrBLUP, testthat (>=
        3.0.0)
RoxygenNote: 7.2.2
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/BG2
git_branch: RELEASE_3_21
git_last_commit: af323f1
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-15 23:22:59 UTC; biocbuild
Author: Jacob Williams [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6425-1365>),
  Shuangshuang Xu [aut],
  Marco Ferreira [aut] (ORCID: <https://orcid.org/0000-0002-4705-5661>)
Maintainer: Jacob Williams <jwilliams@vt.edu>
Built: R 4.5.0; ; 2025-04-16 13:57:19 UTC; windows
