Package: DNAcycP2
Title: DNA Cyclizability Prediction
Version: 1.0.0
Authors@R: 
    person("Brody", "Kendall", 
        email = "curtiskendall2025@u.northwestern.edu", 
        role = c("aut"))
    person("Keren", "Li",
        email = "kli@uab.edu",
        role = c("aut"))
    person("Ji-Ping", "Wang", 
        email = "jzwang@northwestern.edu", 
        role = c("aut", "cre"),
        comment = c(ORCID="0000-0002-8398-939X"))
Description: This package performs prediction of intrinsic cyclizability of of every 50-bp subsequence in a DNA sequence. The input could be a file either in FASTA or text format. The output will be the C-score, the estimated intrinsic cyclizability score for each 50 bp sequences in each entry of the sequence set.  
Depends: R (>= 4.4.0)
Imports: basilisk, reticulate
License: Artistic-2.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
StagedInstall: yes
BinaryFiles: inst/extdata/irlstm/saved_model.pb,
        inst/extdata/irlstm_smooth/saved_model.pb
biocViews: NeuralNetwork, StructuralPrediction
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, BiocGenerics, RUnit, tinytest, BiocStyle,
        Biostrings
URL: https://github.com/jipingw/DNAcycP2
BugReports: https://github.com/jipingw/DNAcycP2
git_url: https://git.bioconductor.org/packages/DNAcycP2
git_branch: RELEASE_3_21
git_last_commit: 1f037b7
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 00:28:26 UTC; biocbuild
Author: Ji-Ping Wang [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8398-939X>)
Maintainer: Ji-Ping Wang <jzwang@northwestern.edu>
Built: R 4.5.0; ; 2025-04-16 14:21:16 UTC; windows
