Package: DOSE
Type: Package
Title: Disease Ontology Semantic and Enrichment analysis
Version: 4.2.0
Authors@R: c( person(given = "Guangchuang", family = "Yu",        email = "guangchuangyu@gmail.com",   role = c("aut", "cre")),
              person(given = "Li-Gen",      family = "Wang",      email = "reeganwang020@gmail.com",   role = "ctb"),
              person(given = "Vladislav",   family = "Petyuk",    email = "petyuk@gmail.com",          role = "ctb"),
              person(given = "Giovanni",    family = "Dall'Olio", email = "giovanni.dallolio@upf.edu", role = "ctb"))
Maintainer: Guangchuang Yu <guangchuangyu@gmail.com>
Description: This package implements five methods proposed by
    Resnik, Schlicker, Jiang, Lin and Wang respectively
    for measuring semantic similarities among DO terms and
    gene products. Enrichment analyses including hypergeometric
    model and gene set enrichment analysis are also implemented
    for discovering disease associations of high-throughput
    biological data.
Depends: R (>= 3.5.0)
Imports: AnnotationDbi, BiocParallel, fgsea, ggplot2, GOSemSim (>=
        2.31.2), methods, qvalue, reshape2, stats, utils, yulab.utils
        (>= 0.1.6)
Suggests: prettydoc, clusterProfiler, gson (>= 0.0.5), knitr, memoise,
        org.Hs.eg.db, rmarkdown, testthat
VignetteBuilder: knitr
ByteCompile: true
License: Artistic-2.0
Encoding: UTF-8
URL: https://yulab-smu.top/contribution-knowledge-mining/
BugReports: https://github.com/GuangchuangYu/DOSE/issues
Packaged: 2025-04-16 00:19:17 UTC; biocbuild
biocViews: Annotation, Visualization, MultipleComparison,
        GeneSetEnrichment, Pathways, Software
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/DOSE
git_branch: RELEASE_3_21
git_last_commit: eb8781d
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Author: Guangchuang Yu [aut, cre],
  Li-Gen Wang [ctb],
  Vladislav Petyuk [ctb],
  Giovanni Dall'Olio [ctb]
Built: R 4.5.0; ; 2025-04-16 14:21:48 UTC; windows
