Package: DeconvoBuddies
Title: Helper Functions for LIBD Deconvolution
Version: 1.0.0
Date: 2025-03-24
Authors@R: 
    c(
    person(given = "Louise", family = "Huuki-Myers", role = c("aut", "cre"),
    email = "lahuuki@gmail.com", comment = c(ORCID = "0000-0001-5148-3602")),
    person("Leonardo", "Collado-Torres", role = c("ctb"), 
    email = "lcolladotor@gmail.com", comment = c(ORCID = "0000-0003-2140-308X"))
    )
Description: Funtions helpful for LIBD deconvolution project. Includes tools for marker finding with mean ratio, expression plotting, and plotting deconvolution results. Working to include DLPFC datasets.
License: Artistic-2.0
URL: https://github.com/lahuuki/DeconvoBuddies
BugReports: https://github.com/LieberInstitute/DeconvoBuddies/issues
biocViews: Software, SingleCell, RNASeq, GeneExpression,
        Transcriptomics, ExperimentHubSoftware
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: AnnotationHub, BiocFileCache, dplyr, ExperimentHub, ggplot2,
        graphics, grDevices, matrixStats, methods, purrr, rafalib,
        reshape2, S4Vectors, scran, SingleCellExperiment, spatialLIBD,
        stats, stringr, SummarizedExperiment, tibble, utils
Suggests: Biobase, BiocStyle, BisqueRNA, covr, HDF5Array, knitr,
        RColorBrewer, RefManageR, rmarkdown, sessioninfo, testthat (>=
        3.0.0), tidyr, tidyverse
Config/testthat/edition: 3
Depends: R (>= 4.4.0)
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/DeconvoBuddies
git_branch: RELEASE_3_21
git_last_commit: 0134dd4
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 00:12:27 UTC; biocbuild
Author: Louise Huuki-Myers [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5148-3602>),
  Leonardo Collado-Torres [ctb] (ORCID:
    <https://orcid.org/0000-0003-2140-308X>)
Maintainer: Louise Huuki-Myers <lahuuki@gmail.com>
Built: R 4.5.0; ; 2025-04-16 14:17:21 UTC; windows
