Package: Doscheda
Type: Package
Title: A DownStream Chemo-Proteomics Analysis Pipeline
Version: 1.30.0
Author: Bruno Contrino, Piero Ricchiuto
Maintainer: Bruno Contrino <br1contrino@yahoo.co.uk>
Description: Doscheda focuses on quantitative chemoproteomics used to determine protein interaction profiles of small molecules from whole cell or tissue lysates using Mass Spectrometry data. The package provides a shiny application to run the pipeline, several visualisations and a downloadable report of an experiment. 
License: GPL-3
Depends: R (>= 3.4)
Imports: methods, drc, stats, httr, jsonlite, reshape2 , vsn, affy,
        limma, stringr, ggplot2, graphics, grDevices, calibrate,
        corrgram, gridExtra, DT, shiny, shinydashboard, readxl,
        prodlim, matrixStats
biocViews: Proteomics, Normalization, Preprocessing, MassSpectrometry,
        QualityControl, DataImport, Regression
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/Doscheda
git_branch: RELEASE_3_21
git_last_commit: c8edeec
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 00:19:37 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-16 14:21:46 UTC; windows
