Package: DropletUtils
Version: 1.28.1
Date: 2025-07-02
Title: Utilities for Handling Single-Cell Droplet Data
Authors@R: c(
    person("Aaron", "Lun", role = "aut"),
    person("Jonathan", "Griffiths", role=c("ctb", "cre"), email = "jonathan.griffiths.94@gmail.com"),
    person("Davis", "McCarthy", role="ctb"),
    person("Dongze", "He", role="ctb"),
    person("Rob", "Patro", role="ctb"))
Depends: SingleCellExperiment
Imports: utils, stats, methods, Matrix, Rcpp, BiocGenerics, S4Vectors,
        IRanges, GenomicRanges, SummarizedExperiment, BiocParallel,
        SparseArray (>= 1.5.18), DelayedArray (>= 0.31.9),
        DelayedMatrixStats, HDF5Array, rhdf5, edgeR, R.utils, dqrng,
        beachmat, scuttle
Suggests: testthat, knitr, BiocStyle, rmarkdown, jsonlite,
        DropletTestFiles
biocViews: ImmunoOncology, SingleCell, Sequencing, RNASeq,
        GeneExpression, Transcriptomics, DataImport, Coverage
Description: 
    Provides a number of utility functions for handling single-cell 
    (RNA-seq) data from droplet technologies such as 10X Genomics. This 
    includes data loading from count matrices or molecule information files, 
    identification of cells from empty droplets, removal of barcode-swapped 
    pseudo-cells, and downsampling of the count matrix.
License: GPL-3
NeedsCompilation: yes
VignetteBuilder: knitr
LinkingTo: Rcpp, beachmat, Rhdf5lib, BH, dqrng, scuttle
SystemRequirements: C++11, GNU make
RoxygenNote: 7.3.2
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/DropletUtils
git_branch: RELEASE_3_21
git_last_commit: 8b6b353
git_last_commit_date: 2025-07-02
Repository: Bioconductor 3.21
Date/Publication: 2025-07-03
Packaged: 2025-07-03 22:44:00 UTC; biocbuild
Author: Aaron Lun [aut],
  Jonathan Griffiths [ctb, cre],
  Davis McCarthy [ctb],
  Dongze He [ctb],
  Rob Patro [ctb]
Maintainer: Jonathan Griffiths <jonathan.griffiths.94@gmail.com>
Built: R 4.5.1; x86_64-w64-mingw32; 2025-07-04 13:03:03 UTC; windows
Archs: x64
