Package: EWCE
Type: Package
Title: Expression Weighted Celltype Enrichment
Version: 1.16.0
Authors@R: 
    c(person(given = "Alan",
           family = "Murphy",
           role = c("cre"),
           email = "alanmurph94@hotmail.com",
           comment = c(ORCID = "0000-0002-2487-8753")),
     person(given = "Brian",
           family = "Schilder",
           role = c("aut"),
           email = "brian_schilder@alumni.brown.edu",
           comment = c(ORCID = "0000-0001-5949-2191")),
     person(given = "Nathan",
           family = "Skene",
           role = c("aut"),
           email = "nathan.skene@gmail.com",
           comment = c(ORCID = "0000-0002-6807-3180")))      
Description: Used to determine which cell types are enriched within gene lists. The package
        provides tools for testing enrichments within simple gene lists (such as human disease
        associated genes) and those resulting from differential expression studies. The package does
        not depend upon any particular Single Cell Transcriptome dataset and user defined datasets
        can be loaded in and used in the analyses.
URL: https://github.com/NathanSkene/EWCE
BugReports: https://github.com/NathanSkene/EWCE/issues
License: GPL-3
Depends: R (>= 4.2), RNOmni (>= 1.0)
VignetteBuilder: knitr
Imports: stats, utils, methods, ewceData (>= 1.7.1), dplyr, ggplot2,
        reshape2, limma, stringr, HGNChelper, Matrix, parallel,
        SingleCellExperiment, SummarizedExperiment, DelayedArray,
        BiocParallel, orthogene (>= 0.99.8), data.table
Suggests: rworkflows, remotes, knitr, BiocStyle, rmarkdown, testthat
        (>= 3.0.0), readxl, memoise, markdown, sctransform, DESeq2,
        MAST, DelayedMatrixStats, ggdendro, scales, patchwork
biocViews: GeneExpression, Transcription, DifferentialExpression,
        GeneSetEnrichment, Genetics, Microarray, mRNAMicroarray,
        OneChannel, RNASeq, BiomedicalInformatics, Proteomics,
        Visualization, FunctionalGenomics, SingleCell
RoxygenNote: 7.3.1
Encoding: UTF-8
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/EWCE
git_branch: RELEASE_3_21
git_last_commit: fe732b5
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 00:40:31 UTC; biocbuild
Author: Alan Murphy [cre] (ORCID: <https://orcid.org/0000-0002-2487-8753>),
  Brian Schilder [aut] (ORCID: <https://orcid.org/0000-0001-5949-2191>),
  Nathan Skene [aut] (ORCID: <https://orcid.org/0000-0002-6807-3180>)
Maintainer: Alan Murphy <alanmurph94@hotmail.com>
Built: R 4.5.0; ; 2025-04-16 14:26:18 UTC; windows
