GOTHiC                  Genome Organisation Through HiC
GOTHiChicup             Genome Organisation Through HiC from HiCUP
                        output
filtered                A GenomicRangesList object used as an example
                        in the GOTHiC package
mapReadsToRestrictionSites
                        Function to map aligned and paired reads to the
                        restriction fragments
pairReads               Function pairs aligned paired NGS reads
