Package: GenomeInfoDb
Title: Utilities for manipulating chromosome names, including modifying
        them to follow a particular naming style
Description: Contains data and functions that
	define and allow translation between different chromosome
	sequence naming conventions (e.g., "chr1" versus "1"),
	including a function that attempts to place sequence names in
	their natural, rather than lexicographic, order.
biocViews: Genetics, DataRepresentation, Annotation, GenomeAnnotation
URL: https://bioconductor.org/packages/GenomeInfoDb
Video: http://youtu.be/wdEjCYSXa7w
BugReports: https://github.com/Bioconductor/GenomeInfoDb/issues
Version: 1.44.1
License: Artistic-2.0
Encoding: UTF-8
Authors@R: c(
	person("Sonali", "Arora", role="aut"),
	person("Martin", "Morgan", role="aut"),
	person("Marc", "Carlson", role="aut"),
	person("Hervé", "Pagès", role=c("aut", "cre"),
		email="hpages.on.github@gmail.com"),
	person("Prisca Chidimma", "Maduka", role="ctb"),
	person("Atuhurira Kirabo", "Kakopo", role="ctb"),
	person("Haleema", "Khan", role="ctb",
		comment="vignette translation from Sweave to Rmarkdown / HTML"),
	person("Emmanuel Chigozie", "Elendu", role="ctb"))
Depends: R (>= 4.0.0), methods, BiocGenerics (>= 0.53.2), S4Vectors (>=
        0.45.2), IRanges (>= 2.41.1)
Imports: stats, stats4, utils, UCSC.utils, GenomeInfoDbData
Suggests: R.utils, data.table, GenomicRanges, Rsamtools,
        GenomicAlignments, GenomicFeatures, BSgenome,
        TxDb.Dmelanogaster.UCSC.dm3.ensGene,
        BSgenome.Scerevisiae.UCSC.sacCer2, BSgenome.Celegans.UCSC.ce2,
        BSgenome.Hsapiens.NCBI.GRCh38, RUnit, BiocStyle, knitr
VignetteBuilder: knitr
Collate: utils.R fetch_table_dump_from_Ensembl_FTP.R list_ftp_dir.R
        rankSeqlevels.R NCBI-utils.R UCSC-utils.R Ensembl-utils.R
        getChromInfoFromNCBI.R getChromInfoFromUCSC.R
        getChromInfoFromEnsembl.R loadTaxonomyDb.R mapGenomeBuilds.R
        seqinfo.R Seqinfo-class.R seqlevelsStyle.R seqlevels-wrappers.R
        GenomeDescription-class.R zzz.R
git_url: https://git.bioconductor.org/packages/GenomeInfoDb
git_branch: RELEASE_3_21
git_last_commit: 527ee76
git_last_commit_date: 2025-07-17
Repository: Bioconductor 3.21
Date/Publication: 2025-07-21
NeedsCompilation: no
Packaged: 2025-07-21 23:28:38 UTC; biocbuild
Author: Sonali Arora [aut],
  Martin Morgan [aut],
  Marc Carlson [aut],
  Hervé Pagès [aut, cre],
  Prisca Chidimma Maduka [ctb],
  Atuhurira Kirabo Kakopo [ctb],
  Haleema Khan [ctb] (vignette translation from Sweave to Rmarkdown /
    HTML),
  Emmanuel Chigozie Elendu [ctb]
Maintainer: Hervé Pagès <hpages.on.github@gmail.com>
Built: R 4.5.1; ; 2025-07-22 13:18:10 UTC; windows
