Package: INSPEcT
Type: Package
Title: Modeling RNA synthesis, processing and degradation with RNA-seq
        data
Version: 1.38.0
Date: 2020-08-09
Author: Stefano de Pretis
Maintainer: Stefano de Pretis <ste.depo@gmail.com>,
 Mattia Furlan <Mattia.Furlan@iit.it>
Description: INSPEcT (INference of Synthesis, Processing and 
	dEgradation rates from Transcriptomic data) RNA-seq data
	in time-course experiments or steady-state conditions, with
	or without the support of nascent RNA data.
License: GPL-2
Depends: R (>= 3.6), methods, Biobase, BiocParallel
Imports: pROC, deSolve, rootSolve, KernSmooth, readxl, GenomicFeatures,
        GenomicRanges, IRanges, BiocGenerics, GenomicAlignments,
        Rsamtools, S4Vectors, GenomeInfoDb, DESeq2, plgem, rtracklayer,
        SummarizedExperiment, TxDb.Mmusculus.UCSC.mm9.knownGene, shiny
Suggests: BiocStyle, knitr, rmarkdown
VignetteBuilder: knitr
biocViews: Sequencing, RNASeq, GeneRegulation, TimeCourse,
        SystemsBiology
NeedsCompilation: no
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/INSPEcT
git_branch: RELEASE_3_21
git_last_commit: 7870789
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Packaged: 2025-04-16 01:33:54 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-16 14:42:20 UTC; windows
