Package: MSstats
Title: Protein Significance Analysis in DDA, SRM and DIA for Label-free
        or Label-based Proteomics Experiments
Version: 4.16.1
Date: 2025-03-05
Description: A set of tools for statistical relative protein significance analysis in DDA, SRM and DIA experiments.
Authors@R: c(
  person("Meena", "Choi", email = "mnchoi67@gmail.com", role = c("aut", "cre")),
  person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = "aut"),
  person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = "aut"),
  person("Tony", "Wu", email = "wu.anthon@northeastern.edu", role = "aut"),
  person("Deril", "Raju", email = "raju.d@northeastern.edu", role = "aut"),
  person("Tsung-Heng", "Tsai", email = "tsai.tsungheng@gmail.com", role = "aut"), 
  person("Ting", "Huang", email = "thuang0703@gmail.com", role = "aut"),
  person("Olga", "Vitek", email = "o.vitek@northeastern.edu", role = "aut")) 
License: Artistic-2.0
Depends: R (>= 4.0)
Imports: MSstatsConvert, data.table, checkmate, MASS, htmltools, limma,
        lme4, preprocessCore, survival, utils, Rcpp, ggplot2, ggrepel,
        gplots, plotly, marray, stats, grDevices, graphics, methods,
        statmod, parallel
Suggests: BiocStyle, knitr, rmarkdown, tinytest, covr, markdown,
        mockery, kableExtra
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software,
        Normalization, QualityControl, TimeCourse
LazyData: true
URL: http://msstats.org
BugReports: https://groups.google.com/forum/#!forum/msstats
RoxygenNote: 7.3.2
Encoding: UTF-8
NeedsCompilation: yes
Packaged: 2025-07-04 00:38:58 UTC; biocbuild
LinkingTo: Rcpp, RcppArmadillo
git_url: https://git.bioconductor.org/packages/MSstats
git_branch: RELEASE_3_21
git_last_commit: a221510
git_last_commit_date: 2025-07-02
Repository: Bioconductor 3.21
Date/Publication: 2025-07-03
Author: Meena Choi [aut, cre],
  Mateusz Staniak [aut],
  Devon Kohler [aut],
  Tony Wu [aut],
  Deril Raju [aut],
  Tsung-Heng Tsai [aut],
  Ting Huang [aut],
  Olga Vitek [aut]
Maintainer: Meena Choi <mnchoi67@gmail.com>
Built: R 4.5.1; x86_64-w64-mingw32; 2025-07-04 13:38:32 UTC; windows
Archs: x64
