# Generated by roxygen2: do not edit by hand

export(CharacterNumbers)
export(ColnamesToFactors)
export(DATAnormalization)
export(DATAplotBoxplotSamples)
export(DATAplotExpression1Gene)
export(DATAplotExpressionGenes)
export(DATAprepSE)
export(DEanalysisGlobal)
export(DEanalysisGroup)
export(DEanalysisSubData)
export(DEanalysisTime)
export(DEanalysisTimeAndGroup)
export(DEplotAlluvial)
export(DEplotBarplot)
export(DEplotBarplotFacetGrid)
export(DEplotBarplotTime)
export(DEplotHeatmaps)
export(DEplotVennBarplotGroup)
export(DEplotVennBarplotTime)
export(DEplotVolcanoMA)
export(DEresultGroup)
export(DEresultGroupPerTime)
export(GSEAQuickAnalysis)
export(GSEApreprocessing)
export(HCPCanalysis)
export(MFUZZanalysis)
export(MFUZZclustersNumber)
export(PCAanalysis)
export(PCAgraphics)
export(PCApreprocessing)
export(PCArealization)
export(RawCountsSimulation)
importFrom(Biobase,ExpressionSet)
importFrom(Biobase,assayData)
importFrom(ComplexHeatmap,Heatmap)
importFrom(ComplexHeatmap,HeatmapAnnotation)
importFrom(ComplexHeatmap,rowAnnotation)
importFrom(DESeq2,DESeq)
importFrom(DESeq2,DESeqDataSetFromMatrix)
importFrom(DESeq2,counts)
importFrom(DESeq2,estimateSizeFactors)
importFrom(DESeq2,results)
importFrom(DESeq2,resultsNames)
importFrom(DESeq2,rlog)
importFrom(DESeq2,varianceStabilizingTransformation)
importFrom(DESeq2,vst)
importFrom(FactoMineR,HCPC)
importFrom(FactoMineR,PCA)
importFrom(FactoMineR,plot.PCA)
importFrom(Mfuzz,fill.NA)
importFrom(Mfuzz,filter.NA)
importFrom(Mfuzz,filter.std)
importFrom(Mfuzz,mestimate)
importFrom(Mfuzz,mfuzz)
importFrom(Mfuzz,mfuzz.plot2)
importFrom(Mfuzz,standardise)
importFrom(S4Vectors,metadata)
importFrom(SummarizedExperiment,SummarizedExperiment)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,assays)
importFrom(SummarizedExperiment,colData)
importFrom(SummarizedExperiment,colnames)
importFrom(SummarizedExperiment,rowData)
importFrom(SummarizedExperiment,rownames)
importFrom(UpSetR,elements)
importFrom(UpSetR,upset)
importFrom(factoextra,fviz_cluster)
importFrom(factoextra,fviz_dend)
importFrom(ggalluvial,stat_alluvium)
importFrom(ggalluvial,stat_stratum)
importFrom(ggplot2,aes)
importFrom(ggplot2,coord_flip)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_grid)
importFrom(ggplot2,geom_area)
importFrom(ggplot2,geom_bar)
importFrom(ggplot2,geom_boxplot)
importFrom(ggplot2,geom_dotplot)
importFrom(ggplot2,geom_errorbar)
importFrom(ggplot2,geom_hline)
importFrom(ggplot2,geom_jitter)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,geom_point)
importFrom(ggplot2,geom_segment)
importFrom(ggplot2,geom_violin)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,guide_axis)
importFrom(ggplot2,guide_legend)
importFrom(ggplot2,guides)
importFrom(ggplot2,labs)
importFrom(ggplot2,position_dodge)
importFrom(ggplot2,position_jitter)
importFrom(ggplot2,position_nudge)
importFrom(ggplot2,rel)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_fill_brewer)
importFrom(ggplot2,scale_fill_manual)
importFrom(ggplot2,scale_shape_manual)
importFrom(ggplot2,scale_size_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_x_discrete)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(ggplot2,theme_bw)
importFrom(ggplot2,theme_classic)
importFrom(ggplot2,theme_minimal)
importFrom(ggplot2,unit)
importFrom(ggplot2,xlab)
importFrom(ggplot2,ylab)
importFrom(ggplot2,ylim)
importFrom(ggplotify,as.ggplot)
importFrom(ggrepel,geom_label_repel)
importFrom(gprofiler2,gost)
importFrom(gprofiler2,gostplot)
importFrom(gprofiler2,publish_gosttable)
importFrom(grDevices,dev.control)
importFrom(grDevices,dev.cur)
importFrom(grDevices,dev.off)
importFrom(grDevices,dev.set)
importFrom(grDevices,pdf)
importFrom(grDevices,png)
importFrom(grDevices,rainbow)
importFrom(grDevices,recordPlot)
importFrom(graphics,legend)
importFrom(graphics,lines)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,text)
importFrom(grid,gpar)
importFrom(plot3D,scatter3D)
importFrom(plot3D,text3D)
importFrom(plot3Drgl,plotrgl)
importFrom(reshape2,melt)
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,kmeans)
importFrom(stats,model.matrix)
importFrom(stats,reformulate)
importFrom(stats,rexp)
importFrom(stats,rnbinom)
importFrom(stats,rnorm)
importFrom(stats,runif)
importFrom(stats,sd)
importFrom(stats,var)
importFrom(utils,write.table)
