Package: OVESEG
Type: Package
Title: OVESEG-test to detect tissue/cell-specific markers
Version: 1.24.0
Author: Lulu Chen <luluchen@vt.edu>
Maintainer: Lulu Chen <luluchen@vt.edu>
biocViews: Software, MultipleComparison, CellBiology, GeneExpression
Description: An R package for multiple-group comparison to detect 
    tissue/cell-specific marker genes among subtypes. It provides functions to 
    compute OVESEG-test statistics, derive component weights in the mixture 
    null distribution model and estimate p-values from weightedly aggregated 
    permutations. Obtained posterior probabilities of component null hypotheses
    can also portrait all kinds of upregulation patterns among subtypes.
License: GPL-2
Encoding: UTF-8
Depends: R (>= 3.6)
Suggests: knitr, rmarkdown, BiocStyle, testthat, ggplot2, gridExtra,
        grid, reshape2, scales
VignetteBuilder: knitr
Imports: stats, utils, methods, BiocParallel, SummarizedExperiment,
        limma, fdrtool, Rcpp
BugReports: https://github.com/Lululuella/OVESEG
RoxygenNote: 6.1.1
LinkingTo: Rcpp
SystemRequirements: C++11
git_url: https://git.bioconductor.org/packages/OVESEG
git_branch: RELEASE_3_21
git_last_commit: 47353d5
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: yes
Packaged: 2025-04-16 02:41:19 UTC; biocbuild
Built: R 4.5.0; x86_64-w64-mingw32; 2025-04-16 15:05:44 UTC; windows
Archs: x64
