Package: PIPETS
Title: Poisson Identification of PEaks from Term-Seq data
Version: 1.4.0
Authors@R: 
    person("Quinlan", "Furumo", email="furumo@bc.edu", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4486-302X"))
Description: PIPETS provides statistically robust analysis for 3'-seq/term-seq data. It utilizes a sliding window approach to apply a Poisson Distribution test to identify genomic positions with termination read coverage that is significantly higher than the surrounding signal. PIPETS then condenses proximal signal and produces strand specific results that contain all significant termination peaks. 
License: GPL-3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 4.4.0)
Imports: dplyr, utils, stats, GenomicRanges, BiocGenerics, methods
Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
BugReports: https://github.com/qfurumo/PIPETS/issues
URL: https://github.com/qfurumo/PIPETS
biocViews: Sequencing, Transcription, GeneRegulation, PeakDetection,
        Genetics, Transcriptomics, Coverage
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/PIPETS
git_branch: RELEASE_3_21
git_last_commit: 8a29c81
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 02:49:44 UTC; biocbuild
Author: Quinlan Furumo [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4486-302X>)
Maintainer: Quinlan Furumo <furumo@bc.edu>
Built: R 4.5.0; ; 2025-04-16 15:09:15 UTC; windows
