Package: PIUMA
Type: Package
Title: Phenotypes Identification Using Mapper from topological data
        Analysis
Version: 1.4.0
Authors@R: c(
    person("Mattia", "Chiesa", , "mattia.chiesa@cardiologicomonzino.it", 
	role = c("aut", "cre"), comment = c(ORCID = "0000-0001-7427-9954")),
    person("Arianna", "Dagliati", , "arianna.dagliati@unipv.it",
	role = "aut", comment = c(ORCID = "0000-0002-5041-0409")),
	person("Alessia", "Gerbasi", , "alessia.gerbasi01@universitadipavia.it",
	role = "aut", comment = c(ORCID = "0000-0003-4501-1777")),
	person("Giuseppe", "Albi", , "giuseppe.albi01@universitadipavia.it",
	role = "aut"),
	person("Laura", "Ballarini", , "laura.ballarini01@universitadipavia.it",
	role = "aut"),
	person("Luca", "Piacentini", , "luca.piacentini@cardiologicomonzino.it",
	role = "aut", comment = c(ORCID = "0000-0003-1022-4481"))
  )
Description: The PIUMA package offers a tidy pipeline of Topological
        Data Analysis frameworks to identify and characterize 
		communities in high and heterogeneous dimensional data.
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: false
biocViews: Clustering, GraphAndNetwork, DimensionReduction, Network,
        Classification
VignetteBuilder: knitr
Imports: cluster, umap, tsne, kernlab, vegan, dbscan, igraph, scales,
        Hmisc, patchwork, grDevices, stats, methods,
        SummarizedExperiment
Suggests: BiocStyle, knitr, testthat, rmarkdown
Depends: R (>= 4.3), ggplot2
RoxygenNote: 7.2.3
URL: https://github.com/BioinfoMonzino/PIUMA
BugReports: https://github.com/BioinfoMonzino/PIUMA/issues
git_url: https://git.bioconductor.org/packages/PIUMA
git_branch: RELEASE_3_21
git_last_commit: da18974
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 02:51:51 UTC; biocbuild
Author: Mattia Chiesa [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-7427-9954>),
  Arianna Dagliati [aut] (ORCID: <https://orcid.org/0000-0002-5041-0409>),
  Alessia Gerbasi [aut] (ORCID: <https://orcid.org/0000-0003-4501-1777>),
  Giuseppe Albi [aut],
  Laura Ballarini [aut],
  Luca Piacentini [aut] (ORCID: <https://orcid.org/0000-0003-1022-4481>)
Maintainer: Mattia Chiesa <mattia.chiesa@cardiologicomonzino.it>
Built: R 4.5.0; ; 2025-04-16 15:09:19 UTC; windows
