CartesianLayout         Cartesian layout
Convert-Names-and-Classes
                        Convert aspect class name to RCX accession
CyGroups                Cytoscape Groups
CyHiddenAttributes      Cytoscape hidden attributes
CyNetworkRelations      Cytoscape network relations
CySubNetworks           Cytoscape subnetworks
CyTableColumn           Cytoscape table column properties
CyVisualProperties      Cytoscape visual properties (aspect)
CyVisualProperty        Cytoscape visual property (object used in
                        CyVisualProperties aspect)
CyVisualPropertyDependencies
                        Create a object for dependency of Cytoscape
                        Visual Properties (object used in
                        CyVisualProperty)
CyVisualPropertyMappings
                        Create an object for mappings of Cytoscape
                        Visual Properties (object used in
                        CyVisualProperty)
CyVisualPropertyProperties
                        Create a object for properties of Cytoscape
                        Visual Properties (object used in
                        CyVisualProperty)
EdgeAttributes          Edge attributes
Edges                   Edges
Igraph                  Convert an RCX object from and to an igraph
                        object
Meta-data               Update RCX meta-data
NetworkAttributes       Network attributes
NodeAttributes          Node attributes
Nodes                   Nodes
RCX                     R package implementing the Cytoscape Exchange
                        (CX) format
RCX-object              Create an RCX object from aspects
aspectClasses           aspectClasses and subAspectClasses
countElements           Number of elements in aspect
custom-print            Print functions for RCX and aspect classes
getCyVisualProperty     Get a Cytoscape visual property (object used in
                        CyVisualProperties aspect) by appliesTo and
                        view
graphNEL                Convert an RCX object from and to an graphNEL
                        object
hasIds                  IDs of an aspect
idProperty              Name of the property of an aspect that is an ID
jsonToRCX               Convert parsed JSON aspects to RCX
maxId                   Highest ID of an aspect
rcxToJson               Convert RCX aspects to JSON
readCX                  Read CX from file, parse the JSON and convert
                        it to an RCX object
referredBy              List the aspects that are refered by an other
                        aspect
refersTo                Name of the property of an aspect that is an ID
setExtension            Set or register an RCX extension
summary                 RCX and aspect summary
toCX                    Convert an RCX object to CX (JSON)
updateCartesianLayout   Update Cartesian Layouts
updateCyGroups          Update Cytoscape Groups
updateCyHiddenAttributes
                        Update Cytoscape hidden attributes
updateCyNetworkRelations
                        Update Cytoscape network relations
updateCySubNetworks     Update Cytoscape subnetworks
updateCyTableColumn     Update Cytoscape table column properties
updateCyVisualProperties
                        Update Cytoscape Visual Properties (aspect)
updateCyVisualProperty
                        Update Cytoscape Visual Property objects and
                        sub-objects (used in CyVisualProperties aspect)
updateEdgeAttributes    Update edge attributes
updateEdges             Update edges
updateMetaDataProperties
                        Update meta-data properties
updateNetworkAttributes
                        Update network attributes
updateNodeAttributes    Update node attributes
updateNodes             Update nodes
validate                Validate RCX and its aspects
visualize               Visualize a Network
writeCX                 Write RCX to file
writeHTML               Save network visualization as HTML file
