Package: RegionalST
Type: Package
Title: Investigating regions of interest and performing regional cell
        type-specific analysis with spatial transcriptomics data
Version: 1.6.0
Authors@R: person(given = "Ziyi", 
                  family = "Li", 
                  role=c("aut", "cre"), 
                  email="zli16@mdanderson.org")
Description: This package analyze spatial transcriptomics data through cross-regional cell type-specific analysis. It selects regions of interest (ROIs) and identifys cross-regional cell type-specific differential signals. The ROIs can be selected using automatic algorithm or through manual selection. It facilitates manual selection of ROIs using a shiny application. 
License: GPL-3
Encoding: UTF-8
LazyData: FALSE
RoxygenNote: 7.3.2
biocViews: Spatial, Transcriptomics, Reactome, KEGG
Depends: R (>= 4.3.0)
Imports: stats, grDevices, utils, ggplot2, dplyr, scater, gridExtra,
        BiocStyle, BayesSpace, fgsea, magrittr, SingleCellExperiment,
        RColorBrewer, Seurat, S4Vectors, tibble, TOAST, assertthat,
        colorspace, shiny, SummarizedExperiment
Suggests: knitr, rmarkdown, gplots, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/RegionalST
git_branch: RELEASE_3_21
git_last_commit: a0c7eb3
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-06-05
NeedsCompilation: no
Packaged: 2025-06-06 01:40:17 UTC; biocbuild
Author: Ziyi Li [aut, cre]
Maintainer: Ziyi Li <zli16@mdanderson.org>
Built: R 4.5.0; ; 2025-06-06 13:56:02 UTC; windows
