Package: SPLINTER
Type: Package
Title: Splice Interpreter of Transcripts
Version: 1.34.0
Date: 2024-04-24
Authors@R: person("Diana", "Low",  email = "lowdiana@gmail.com",
        role = c("aut", "cre"))
URL: https://github.com/dianalow/SPLINTER/
BugReports: https://github.com/dianalow/SPLINTER/issues
Description: Provides tools to analyze alternative splicing
        sites, interpret outcomes based on sequence information, select
        and design primers for site validiation and give visual
        representation of the event to guide downstream experiments.
License: GPL-2
LazyData: TRUE
Depends: R (>= 3.6.0), grDevices, stats
Imports: graphics, ggplot2, seqLogo, Biostrings, pwalign, biomaRt,
        GenomicAlignments, GenomicRanges, GenomicFeatures, Gviz,
        IRanges, S4Vectors, GenomeInfoDb, utils, plyr,stringr, methods,
        BSgenome.Mmusculus.UCSC.mm9, googleVis
biocViews: ImmunoOncology, GeneExpression, RNASeq, Visualization,
        AlternativeSplicing
Collate: primerpcr.R main_splinter.R
Encoding: UTF-8
RoxygenNote: 7.3.1
VignetteBuilder: knitr
Suggests: txdbmaker, BiocStyle, knitr, rmarkdown
git_url: https://git.bioconductor.org/packages/SPLINTER
git_branch: RELEASE_3_21
git_last_commit: f02d502
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:59:31 UTC; biocbuild
Author: Diana Low [aut, cre]
Maintainer: Diana Low <lowdiana@gmail.com>
Built: R 4.5.0; ; 2025-04-16 15:37:56 UTC; windows
