# `SPOTlight`: Spatial Transcriptomics Deconvolution

## Documentation for package ‘SPOTlight’ version 1.12.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

data | Synthetic single-cell, mixture and marker data
getMGS | Synthetic single-cell, mixture and marker data
mockSC | Synthetic single-cell, mixture and marker data
mockSP | Synthetic single-cell, mixture and marker data
plotCorrelationMatrix | Plot Correlation Matrix
plotHeatmap | Plot group interactions
plotImage | Plot JP(E)G/PNG/Raster/RGB images
plotInteractions | Plot group interactions
plotNetwork | Plot group interactions
plotSpatialScatterpie | Spatial scatterpie
plotTopicProfiles | Plot NMF topic profiles
runDeconvolution | Run Deconvolution using NNLS model
SPOTlight | Deconvolution of mixture using single-cell data
trainNMF | train NMF model