Package: SomaticSignatures
Type: Package
Title: Somatic Signatures
Version: 2.44.0
Author: Julian Gehring
Maintainer: Julian Gehring <jg-bioc@gmx.com>
Description: The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs).  It provides a infrastructure related to the methodology described in Nik-Zainal (2012, Cell), with flexibility in the matrix decomposition algorithms.
URL: https://github.com/juliangehring/SomaticSignatures
Imports: S4Vectors, IRanges, GenomeInfoDb, Biostrings, ggplot2, ggbio,
        reshape2, NMF, pcaMethods, Biobase, methods, proxy
Depends: R (>= 3.5.0), VariantAnnotation, GenomicRanges, NMF
Suggests: testthat, knitr, parallel,
        BSgenome.Hsapiens.1000genomes.hs37d5, SomaticCancerAlterations,
        ggdendro, fastICA, sva
VignetteBuilder: knitr
ByteCompile: TRUE
License: MIT + file LICENSE
BugReports: https://support.bioconductor.org
LazyLoad: yes
biocViews: Sequencing, SomaticMutation, Visualization, Clustering,
        GenomicVariation, StatisticalMethod
git_url: https://git.bioconductor.org/packages/SomaticSignatures
git_branch: RELEASE_3_21
git_last_commit: f1774bb
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:54:57 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-16 15:35:13 UTC; windows
