Package: TSCAN
Type: Package
Title: Tools for Single-Cell Analysis
Version: 1.46.0
Date: 2024-08-14
Authors@R: c(
        person("Zhicheng", "Ji", role=c("aut", "cre"), email="zji4@jhu.edu"),
        person("Hongkai", "Ji", role=c("aut")),
        person("Aaron", "Lun", role=c("ctb"), email="infinite.monkeys.with.keyboards@gmail.com")
    )
Description: 
    Provides methods to perform trajectory analysis based on a minimum spanning
    tree constructed from cluster centroids. Computes pseudotemporal cell
    orderings by mapping cells in each cluster (or new cells) to the closest
    edge in the tree. Uses linear modelling to identify differentially
    expressed genes along each path through the tree. Several plotting and
    interactive visualization functions are also implemented.
License: GPL(>=2)
Depends: R (>= 4.4.0), SingleCellExperiment, TrajectoryUtils
Imports: ggplot2, shiny, plyr, grid, fastICA, igraph, combinat, mgcv,
        mclust, gplots, methods, stats, Matrix, SummarizedExperiment,
        SparseArray (>= 1.5.23), DelayedArray (>= 0.31.9), S4Vectors
VignetteBuilder: knitr
Suggests: knitr, testthat, scuttle, scran, metapod, BiocParallel,
        BiocNeighbors, batchelor
biocViews: GeneExpression, Visualization, GUI
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-04-16 04:18:22 UTC; biocbuild
Author: Zhicheng Ji [aut, cre],
  Hongkai Ji [aut],
  Aaron Lun [ctb]
Maintainer: Zhicheng Ji <zji4@jhu.edu>
git_url: https://git.bioconductor.org/packages/TSCAN
git_branch: RELEASE_3_21
git_last_commit: 8ccc82f
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Built: R 4.5.0; ; 2025-04-16 15:45:59 UTC; windows
