# TrIdent - Transduction Identification

## Documentation for package ‘TrIdent’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

plotTrIdentResults | Plot read coverage graphs of contigs classified as Prophage-like, Sloping, or HighCovNoPattern
specializedTransductionID | Identify potential specialized transduction events on contigs classified as Prophage-like
TrIdentClassifier | Classify contigs as Prophage-like, Sloping, HighCovNoPattern, and NoPattern