Package: UCell
Type: Package
Title: Rank-based signature enrichment analysis for single-cell data
Version: 2.12.0
Authors@R: c(
  person('Massimo', 'Andreatta', 
     email = 'massimo.andreatta@unil.ch',
     role = c('aut','cre'),
     comment = c(ORCID = '0000-0002-8036-2647')),
  person('Santiago', 'Carmona', 
     email = 'santiago.carmona@unil.ch',
     role = c('aut'),
     comment = c(ORCID = '0000-0002-2495-0671'))
  )
Description: UCell is a package for evaluating gene signatures in single-cell datasets. 
    UCell signature scores, based on the Mann-Whitney U statistic, are robust to dataset size and heterogeneity, and their calculation
    demands less computing time and memory than other available methods, enabling the processing of large datasets in a few minutes even
    on machines with limited computing power. UCell can be applied to any single-cell data matrix, and includes functions to directly
    interact with SingleCellExperiment and Seurat objects.
Depends: R(>= 4.3.0)
Imports: methods, data.table(>= 1.13.6), Matrix, stats, BiocParallel,
        BiocNeighbors, SingleCellExperiment, SummarizedExperiment
Suggests: scater, scRNAseq, reshape2, patchwork, ggplot2, BiocStyle,
        Seurat(>= 5.0.0), SeuratObject(>= 5.0.0), knitr, rmarkdown
biocViews: SingleCell, GeneSetEnrichment, Transcriptomics,
        GeneExpression, CellBasedAssays
VignetteBuilder: knitr
BugReports: https://github.com/carmonalab/UCell/issues
URL: https://github.com/carmonalab/UCell
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/UCell
git_branch: RELEASE_3_21
git_last_commit: af3d550
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 04:25:01 UTC; biocbuild
Author: Massimo Andreatta [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8036-2647>),
  Santiago Carmona [aut] (ORCID: <https://orcid.org/0000-0002-2495-0671>)
Maintainer: Massimo Andreatta <massimo.andreatta@unil.ch>
Built: R 4.5.0; ; 2025-04-16 15:46:28 UTC; windows
