Package: bamsignals
Type: Package
Title: Extract read count signals from bam files
Version: 1.40.0
Date: 2021-11-16
Authors@R: c( person(given="Alessandro",family="Mammana",
        email="mammana@molgen.mpg.de", role=c("aut", "cre")),
        person(given="Johannes",family="Helmuth",
        email="johannes.helmuth@laborberlin.com", role=c("aut")))
Author: Alessandro Mammana [aut, cre], Johannes Helmuth [aut]
Maintainer: Johannes Helmuth <johannes.helmuth@laborberlin.com>
Description: This package allows to efficiently obtain count vectors
    from indexed bam files. It counts the number of reads in given
    genomic ranges and it computes reads profiles and coverage
    profiles. It also handles paired-end data.
License: GPL-2
Depends: R (>= 3.5.0)
Imports: methods, BiocGenerics, Rcpp (>= 0.10.6), IRanges,
        GenomicRanges, zlibbioc
Suggests: testthat (>= 0.9), Rsamtools, BiocStyle, knitr, rmarkdown
LinkingTo: Rcpp, Rhtslib (>= 1.13.1), zlibbioc
SystemRequirements: GNU make
biocViews: DataImport, Sequencing, Coverage, Alignment
VignetteBuilder: knitr
NeedsCompilation: yes
RoxygenNote: 5.0.1
URL: https://github.com/lamortenera/bamsignals
BugReports: https://github.com/lamortenera/bamsignals/issues
git_url: https://git.bioconductor.org/packages/bamsignals
git_branch: RELEASE_3_21
git_last_commit: 0c59dd6
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Packaged: 2025-04-15 23:08:39 UTC; biocbuild
Built: R 4.5.0; x86_64-w64-mingw32; 2025-04-16 13:55:11 UTC; windows
Archs: x64
