Package: barbieQ
Type: Package
Title: Analyze Barcode Data from Clonal Tracking Experiments
Version: 1.0.1
Description: The barbieQ package provides a series of robust statistical tools 
  for analysing barcode count data generated from cell clonal tracking (i.e., lineage tracing) experiments.
  In these experiments, an initial cell and its offspring collectively form a clone (i.e., lineage).
  A unique barcode sequence, incorporated into the DNA of the inital cell, is inherited within the clone. 
  This one-to-one mapping of barcodes to clones enables clonal tracking of their behaviors.
  By counting barcodes, researchers can quantify the population abundance
  of individual clones under specific experimental perturbations. 
  barbieQ supports barcode count data preprocessing, statistical testing, and visualization.
Authors@R: 
  c(person(given = "Liyang", 
           family = "Fei",
           role = c("aut", "cre"),
           email = "liyang.fei@petermac.org",
           comment = c(ORCID = "0000-0002-3293-2094"))
    )
License: GPL-3
LazyData: FALSE
Encoding: UTF-8
VignetteBuilder: knitr
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle
Imports: magrittr, tidyr, dplyr, grid, circlize, ComplexHeatmap,
        ggplot2, logistf, limma, stats, igraph, utils, data.table,
        S4Vectors, SummarizedExperiment
biocViews: Sequencing, Software, Regression, Preprocessing,
        Visualization
BugReports: https://github.com/Oshlack/barbieQ
URL: https://github.com/Oshlack/barbieQ/issues
RoxygenNote: 7.3.2
Config/testthat/edition: 3
Depends: R (>= 4.5)
Roxygen: list(markdown = TRUE)
git_url: https://git.bioconductor.org/packages/barbieQ
git_branch: RELEASE_3_21
git_last_commit: 4eb6b24
git_last_commit_date: 2025-04-30
Repository: Bioconductor 3.21
Date/Publication: 2025-05-01
NeedsCompilation: no
Packaged: 2025-05-01 21:47:00 UTC; biocbuild
Author: Liyang Fei [aut, cre] (ORCID: <https://orcid.org/0000-0002-3293-2094>)
Maintainer: Liyang Fei <liyang.fei@petermac.org>
Built: R 4.5.0; ; 2025-05-02 12:51:24 UTC; windows
