Package: beadarray
Title: Quality assessment and low-level analysis for Illumina BeadArray
        data
Version: 2.58.0
Date: 2024-10-17
Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie
Maintainer: Mark Dunning <m.j.dunning@sheffield.ac.uk>
Description: The package is able to read bead-level data (raw TIFFs and text 
    files) output by BeadScan as well as bead-summary data from BeadStudio.  
    Methods for quality assessment and low-level analysis are provided.
Depends: R (>= 2.13.0), BiocGenerics (>= 0.3.2), Biobase (>= 2.17.8),
        hexbin
Imports: BeadDataPackR, limma, AnnotationDbi, stats4, reshape2,
        GenomicRanges, IRanges, illuminaio, methods, ggplot2
Suggests: lumi, vsn, affy, hwriter, beadarrayExampleData,
        illuminaHumanv3.db, gridExtra, BiocStyle,
        TxDb.Hsapiens.UCSC.hg19.knownGene, ggbio, Nozzle.R1, knitr
License: MIT + file LICENSE
biocViews: Microarray, OneChannel, QualityControl, Preprocessing
LazyData: yes
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/beadarray
git_branch: RELEASE_3_21
git_last_commit: 20636bc
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: yes
Packaged: 2025-04-15 23:16:20 UTC; biocbuild
Built: R 4.5.0; x86_64-w64-mingw32; 2025-04-16 13:56:57 UTC; windows
Archs: x64
