Type: Package
Package: chevreulProcess
Title: Tools for managing SingleCellExperiment objects as projects
Version: 1.0.0
Authors@R: c(
    person("Kevin", "Stachelek", , "kevin.stachelek@gmail.com", 
    role = c("aut", "cre"), comment = c(ORCID = "0000-0003-2085-695X")),
    person("Bhavana", "Bhat", , "bhavanabhat29@gmail.com", role = "aut")
    )
Description: Tools analyzing SingleCellExperiment objects as projects. for 
    input into the Chevreul app downstream. 
    Includes functions for analysis of single cell RNA sequencing data. 
    Supported by NIH grants R01CA137124 and R01EY026661 to David Cobrinik.
License: MIT + file LICENSE
URL: https://github.com/whtns/chevreulProcess,
        https://whtns.github.io/chevreulProcess/
Date: 2024-03-24
BugReports: https://github.com/cobriniklab/chevreulProcess/issues
Depends: R (>= 4.5.0), SingleCellExperiment, scater
Imports: batchelor, bluster, circlize, cluster, DBI, dplyr,
        EnsDb.Hsapiens.v86, ensembldb, fs, GenomicFeatures, glue,
        megadepth, methods, purrr, RSQLite, S4Vectors, scran, scuttle,
        stringr, tibble, tidyr, tidyselect, utils
Suggests: BiocStyle, knitr, RefManageR, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
biocViews: Coverage, RNASeq, Sequencing, Visualization, GeneExpression,
        Transcription, SingleCell, Transcriptomics, Normalization,
        Preprocessing, QualityControl, DimensionReduction, DataImport
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/chevreulProcess
git_branch: RELEASE_3_21
git_last_commit: f23b61d
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-15 23:39:14 UTC; biocbuild
Author: Kevin Stachelek [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-2085-695X>),
  Bhavana Bhat [aut]
Maintainer: Kevin Stachelek <kevin.stachelek@gmail.com>
Built: R 4.5.0; ; 2025-04-16 14:05:57 UTC; windows
