Package: circRNAprofiler
Type: Package
Title: circRNAprofiler: An R-Based Computational Framework for the
        Downstream Analysis of Circular RNAs
Version: 1.22.1
Author: Simona Aufiero
Maintainer: Simona Aufiero <simo.aufiero@gmail.com>
Description: R-based computational framework for a comprehensive in silico 
    analysis of circRNAs. This computational framework allows to combine and 
    analyze circRNAs previously detected by multiple publicly available 
    annotation-based circRNA detection tools. It covers different aspects of 
    circRNAs analysis from differential expression analysis, evolutionary 
    conservation, biogenesis to functional analysis.
License: GPL-3
Encoding: UTF-8
biocViews: Annotation, StructuralPrediction, FunctionalPrediction,
        GenePrediction, GenomeAssembly, DifferentialExpression
Depends: R(>= 4.3.0)
RoxygenNote: 7.2.3
Suggests: testthat, knitr, roxygen2, rmarkdown, devtools, gridExtra,
        ggpubr, VennDiagram, BSgenome.Mmusculus.UCSC.mm9,
        BSgenome.Hsapiens.UCSC.hg38, BSgenome.Mmusculus.UCSC.mm10,
        BiocManager,
Imports: dplyr, magrittr, readr, rtracklayer, stringr, stringi, DESeq2,
        edgeR, GenomicRanges, IRanges, seqinr, R.utils, reshape2,
        ggplot2, utils, rlang, S4Vectors, stats, GenomeInfoDb,
        universalmotif, AnnotationHub, BSgenome.Hsapiens.UCSC.hg19,
        Biostrings, gwascat, BSgenome,
VignetteBuilder: knitr
URL: https://github.com/Aufiero/circRNAprofiler
BugReports: https://github.com/Aufiero/circRNAprofiler/issues
git_url: https://git.bioconductor.org/packages/circRNAprofiler
git_branch: RELEASE_3_21
git_last_commit: 9355431
git_last_commit_date: 2025-05-08
Repository: Bioconductor 3.21
Date/Publication: 2025-05-08
NeedsCompilation: no
Packaged: 2025-05-08 22:17:28 UTC; biocbuild
Built: R 4.5.0; ; 2025-05-09 12:42:03 UTC; windows
