# Differential Topology, Progression and Differentiation

## Documentation for package ‘condiments’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

create_differential_topology | Create Example function
differentiationTest | Differential differentiation
fateSelectionTest | Differential fate selection Test
fateSelectionTest-method | Differential fate selection Test
fateSelectionTest_multipleSamples | Differential fate selection Test with multiple samples
fateSelectionTest_multipleSamples-method | Differential fate selection Test with multiple samples
imbalance_score | Imbalance Score
imbalance_score-method | Imbalance Score
merge_sds | Merge slingshots datasets
nLineages | Number of lineages
nLineages-method | Number of lineages
progressionTest | Differential Progression Test
progressionTest-method | Differential Progression Test
progressionTest_multipleSamples | Differential Progression Test with multiple samples
progressionTest_multipleSamples-method | Differential Progression Test with multiple samples
slingshot_conditions | Refitting slingshot per condition
slingshot_conditions-method | Refitting slingshot per condition
topologyTest | Differential Topology Test
topologyTest-method | Differential Topology Test
topologyTest_multipleSamples | Differential Topology Test with multiple samples
topologyTest_multipleSamples-method | Differential Topology Test with multiple samples
toy_dataset | A toy dataset used in the vignette and in the examples
weights_from_pst | weights_from_pst
weights_from_pst-method | weights_from_pst