Package: easyRNASeq
Version: 2.44.0
Date: 2024-08-07
Type: Package
Title: Count summarization and normalization for RNA-Seq data
Author: Nicolas Delhomme, Ismael Padioleau, Bastian Schiffthaler, Niklas Maehler
Maintainer: Nicolas Delhomme <nicolas.delhomme@umu.se>
Description: Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.
Imports: Biobase (>= 2.64.0), BiocFileCache (>= 2.12.0), BiocGenerics
        (>= 0.50.0), BiocParallel (>= 1.38.0), biomaRt (>= 2.60.1),
        Biostrings (>= 2.72.1), edgeR (>= 4.2.1), GenomeInfoDb (>=
        1.40.1), genomeIntervals (>= 1.60.0), GenomicAlignments (>=
        1.40.0), GenomicRanges (>= 1.56.1), SummarizedExperiment (>=
        1.34.0), graphics, IRanges (>= 2.38.1), LSD (>= 4.1-0),
        methods, parallel, rappdirs (>= 0.3.3), Rsamtools (>= 2.20.0),
        S4Vectors (>= 0.42.1), ShortRead (>= 1.62.0), utils
Suggests: BiocStyle (>= 2.32.1), BSgenome (>= 1.72.0),
        BSgenome.Dmelanogaster.UCSC.dm3 (>= 1.4.0), curl, knitr,
        rmarkdown, RUnit (>= 0.4.33)
License: Artistic-2.0
LazyLoad: yes
VignetteBuilder: knitr
biocViews: GeneExpression, RNASeq, Genetics, Preprocessing,
        ImmunoOncology
RoxygenNote: 7.3.2
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/easyRNASeq
git_branch: RELEASE_3_21
git_last_commit: 8c15d8f
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 00:26:05 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-16 14:23:11 UTC; windows
