# Fast, Epiallele-Aware Methylation Caller and Reporter

## Documentation for package ‘epialleleR’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

callMethylation | callMethylation
extractPatterns | extractPatterns
generateAmpliconReport | generateBedReport
generateBedEcdf | generateBedEcdf
generateBedReport | generateBedReport
generateCaptureReport | generateBedReport
generateCytosineReport | generateCytosineReport
generateMhlReport | generateMhlReport
generateVcfReport | generateVcfReport
plotPatterns | plotPatterns
preprocessBam | preprocessBam
preprocessGenome | preprocessGenome
simulateBam | simulateBam