Package: fastreeR
Type: Package
Title: Phylogenetic, Distance and Other Calculations on VCF and Fasta
        Files
Version: 1.12.5
biocViews: Phylogenetics, Metagenomics, Clustering
Authors@R: 
    c(person(given = "Anestis",
             family = "Gkanogiannis",
             role = c("aut", "cre"),
             email = "anestis@gkanogiannis.com",
             comment = c(ORCID = "0000-0002-6441-0688"))
    )
Description: Calculate distances, build phylogenetic trees or 
    perform hierarchical clustering between the samples of a VCF or FASTA file.
    Functions are implemented in Java-11 and called via rJava.
    Parallel implementation that operates directly on the VCF or FASTA file 
    for fast execution.
License: GPL-3
Encoding: UTF-8
Language: en-US
Depends: R (>= 4.4)
Imports: ape, data.table, dynamicTreeCut, methods, R.utils, rJava,
        stats, stringr, utils
SystemRequirements: Java (>= 11)
RoxygenNote: 7.3.2
URL: https://github.com/gkanogiannis/fastreeR,
        https://github.com/gkanogiannis/BioInfoJava-Utils
BugReports: https://github.com/gkanogiannis/fastreeR/issues
Suggests: BiocFileCache, BiocStyle, graphics, knitr, memuse, rmarkdown,
        spelling, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/fastreeR
git_branch: RELEASE_3_21
git_last_commit: ba67a98
git_last_commit_date: 2025-08-08
Repository: Bioconductor 3.21
Date/Publication: 2025-08-11
NeedsCompilation: no
Packaged: 2025-08-11 23:29:05 UTC; biocbuild
Author: Anestis Gkanogiannis [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6441-0688>)
Maintainer: Anestis Gkanogiannis <anestis@gkanogiannis.com>
Built: R 4.5.1; ; 2025-08-12 13:41:30 UTC; windows
