Package: geneplast
Type: Package
Title: Evolutionary and plasticity analysis of orthologous groups
Version: 1.34.0
Author: Rodrigo Dalmolin, Mauro Castro
Maintainer: Mauro Castro <mauro.a.castro@gmail.com>
Depends: R (>= 4.0), methods
Imports: igraph, snow, ape, grDevices, graphics, stats, utils,
        data.table
Suggests: RTN, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown,
        Fletcher2013b, geneplast.data, geneplast.data.string.v91,
        ggplot2, ggpubr, plyr
Description: Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.
License: GPL (>= 2)
biocViews: Genetics, GeneRegulation, SystemsBiology
VignetteBuilder: knitr
Collate: AllChecks.R AllClasses.R AllGenerics.R AllMethods.R
        AllContructors.R AllSupplements.R AllPlots.R
LazyLoad: yes
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/geneplast
git_branch: RELEASE_3_21
git_last_commit: 1198516
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Packaged: 2025-04-16 00:53:17 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-16 14:31:19 UTC; windows
