Package: girafe
Type: Package
Title: Genome Intervals and Read Alignments for Functional Exploration
Version: 1.60.0
Date: 2024-04-23
Depends: R (>= 2.10.0), methods, BiocGenerics (>= 0.13.8), S4Vectors
        (>= 0.17.25), Rsamtools (>= 1.31.2), intervals (>= 0.13.1),
        ShortRead (>= 1.37.1), genomeIntervals (>= 1.25.1), grid
Imports: methods, Biobase, Biostrings (>= 2.47.6), pwalign, graphics,
        grDevices, stats, utils, IRanges (>= 2.13.12)
Suggests: MASS, org.Mm.eg.db, RColorBrewer
Enhances: genomeIntervals
Author: Joern Toedling, with contributions from Constance Ciaudo,
        Olivier Voinnet, Edith Heard, Emmanuel Barillot, and Wolfgang
        Huber
Maintainer: J. Toedling <jtoedling@yahoo.de>
Description: The package 'girafe' deals with the genome-level
        representation of aligned reads from next-generation sequencing
        data. It contains an object class for enabling a detailed
        description of genome intervals with aligned reads and
        functions for comparing, visualising, exporting and working
        with such intervals and the aligned reads. As such, the package
        interacts with and provides a link between the packages
        ShortRead, IRanges and genomeIntervals.
License: Artistic-2.0
LazyLoad: yes
biocViews: Sequencing
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/girafe
git_branch: RELEASE_3_21
git_last_commit: 1e8b0ed
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: yes
Packaged: 2025-04-16 01:02:28 UTC; biocbuild
Built: R 4.5.0; x86_64-w64-mingw32; 2025-04-16 14:34:40 UTC; windows
Archs: x64
