# iSEE extension for panels related to pathway analysis

## Documentation for package ‘iSEEpathways’ version 1.6.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

.cacheCommonInfo-method | The FgseaEnrichmentPlot class
.cacheCommonInfo-method | The PathwaysTable class
.createObservers-method | The FgseaEnrichmentPlot class
.createObservers-method | The PathwaysTable class
.defineDataInterface-method | The FgseaEnrichmentPlot class
.defineDataInterface-method | The PathwaysTable class
.defineInterface-method | The FgseaEnrichmentPlot class
.defineInterface-method | The PathwaysTable class
.defineOutput-method | The FgseaEnrichmentPlot class
.fullName-method | The FgseaEnrichmentPlot class
.fullName-method | The PathwaysTable class
.generateOutput-method | The FgseaEnrichmentPlot class
.generateTable-method | The PathwaysTable class
.isBrushable-method | The FgseaEnrichmentPlot class
.multiSelectionActive-method | The FgseaEnrichmentPlot class
.multiSelectionActive-method | The PathwaysTable class
.multiSelectionCommands-method | The FgseaEnrichmentPlot class
.multiSelectionCommands-method | The PathwaysTable class
.multiSelectionDimension-method | The FgseaEnrichmentPlot class
.multiSelectionDimension-method | The PathwaysTable class
.panelColor-method | The FgseaEnrichmentPlot class
.panelColor-method | The PathwaysTable class
.refineParameters-method | The FgseaEnrichmentPlot class
.refineParameters-method | The PathwaysTable class
.renderOutput-method | The FgseaEnrichmentPlot class
.showSelectionDetails-method | The FgseaEnrichmentPlot class
.showSelectionDetails-method | The PathwaysTable class
embedPathwaysResults | Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object
embedPathwaysResults-method | The iSEEfgseaResults class
embedPathwaysResults-method | Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object
embedPathwaysResultsMethods | Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object
featuresStats | Generics for Pathway Analysis Results
featuresStats-method | The iSEEfgseaResults class
FgseaEnrichmentPlot | The FgseaEnrichmentPlot class
FgseaEnrichmentPlot-class | The FgseaEnrichmentPlot class
initialize-method | The FgseaEnrichmentPlot class
initialize-method | The PathwaysTable class
iSEEfgseaResults | The iSEEfgseaResults class
iSEEfgseaResults-class | The iSEEfgseaResults class
iSEEpathwaysResults | The iSEEpathwaysResults class
iSEEpathwaysResults-class | The iSEEpathwaysResults class
pathway-generics | Generics for Pathway Analysis Results
pathwaysList | Generics for Pathway Analysis Results
pathwaysList-method | The iSEEfgseaResults class
pathwaysResults | Extract contrast results embedded in a SummarizedExperiment object
pathwaysResultsNames | Extract contrast results embedded in a SummarizedExperiment object
PathwaysTable | The PathwaysTable class
PathwaysTable-class | The PathwaysTable class
pathwayType | Generics for Pathway Analysis Results
pathwayType-method | The iSEEfgseaResults class
show-method | The iSEEpathwaysResults class
simulateExampleData | Simulate Example Data
utils-SummarizedExperiment | Generics for Embbedding Pathway Analysis Results into a SummarizedExperiment Object