4a04986e0c22729440d76e53b33f76a8 *DESCRIPTION
412e476326a4c6d98e3932122c9d834e *INDEX
831e0fefd5419228a199c4ebd42270e6 *LICENSE
aff3ce2bfbafff2a22500cbd17c9f56b *Meta/Rd.rds
41622305d1b139d0fa70aaba76dca134 *Meta/features.rds
1d4c191627b9a8f51a21017fb9d56af2 *Meta/hsearch.rds
acec67a78ef7f5cde442548bc167fe3e *Meta/links.rds
dc66e4295d59bda63929c9b4c2eb47eb *Meta/nsInfo.rds
bc958d76ae6b9801485c083ce7c84d08 *Meta/package.rds
4d024be851fba52e19b4343fea29cb3b *Meta/vignette.rds
6d7b06974e9a3c22efe09dda729e0528 *NAMESPACE
ff639b58856b6e7d3ac28b367919dd6c *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/igvR
fbd5e2f90f91de98407066e87dc4ee41 *R/igvR.rdb
034cd92aa66dabbc049d069eca2774c7 *R/igvR.rdx
0d2734f9b2bf9cb6f4164af9231cdbbe *browserCode/dist/igvApp.html
8ec7d8b9c32b0e3e33d41aa87ac52bdc *browserCode/makefile
8ee2b352fdd0cce854d847d24de69866 *browserCode/src/igvApp.css
2139762f277ebb8b2319caf4eb0b7867 *browserCode/src/igvApp.js
7da500e31b4ec871b270f535977d0549 *browserCode/src/igvApp.pre
65e391d3d35538486b8d6ee4d7a8425c *demos/bamFile.R
58cbdf2943065658f2db219d39def818 *demos/bedgraph-svg-bug.R
5a58a0d6db952f2dc758762589b8e56d *demos/ctcfBamEtc.R
12908c9eb4710cdeac3c2a09cf00729f *demos/customGenome.R
6f3fa2c6d176f9ffc93a25062ad84244 *demos/demo.svg
a5d126a3631fa35362a104736df9b9f0 *demos/gwasDemo.R
f5252a77dd9db8483e3eaeb17f38f4e4 *demos/gwasUrlDemo.R
f819929060eaf6e851a961d168b939de *demos/methylationFromAnnotationHub.R
daaa056415421ad1273c553862665aec *demos/pairedEnd.R
9c95ca9fb1254318d7c87fb7539c1f16 *demos/quantitativeTrackDemo.R
47a026044a0a75e090346396a8699176 *demos/stockGenome.R
d722c6ce21fba14e820f3d54d70cc489 *demos/trackClickDemos.R
b4667f69161821e8150c1719e2a7ef28 *demos/ucscTableBrowser.R
6ab6b0d328b8a200680be40212b620bb *demos/vcfDemo.R
f1d66fa5015ba3139c22ced6cb8b62cf *doc/index.html
97ef8392837cac17d2c65f6633bef3ad *doc/v00.basicIntro.R
d725136861751d037f80e18c206430ea *doc/v00.basicIntro.Rmd
1343280aaeb48500db54f8dbbeff1286 *doc/v00.basicIntro.html
815fc3673a5f0faf434d8ff14ee58bfd *doc/v01.stockGenome.R
80c9638069b28d9ed30981e2a2feed1c *doc/v01.stockGenome.Rmd
aff13a482e46dad59823aa2aefed11cd *doc/v01.stockGenome.html
b385b9ec08542bba977b0eaf4c3b2b51 *doc/v02.customGenome.R
9eab05cb655a2b4f67e24dfe196f8989 *doc/v02.customGenome.Rmd
c3564dc8ada8a48088b33789d2eb2973 *doc/v02.customGenome.html
57d1c20a7691f3686b4f47e7827bb7a3 *doc/v03.ctcfChIP.R
961f4e5e6248b7c723926475ef570c31 *doc/v03.ctcfChIP.Rmd
e29321fc9b39d21eb16dd03423f9f4f6 *doc/v03.ctcfChIP.html
3b5ce5d3b2ac5ace7b75dbbc7355d34f *doc/v04.pairedEnd.R
5835e25f5226a9534b98423d9d341af5 *doc/v04.pairedEnd.Rmd
d83ac983768ec96a987e4a51ebde12df *doc/v04.pairedEnd.html
f2ceb87caf7969e753d0bf024792742c *doc/v05.ucscTableBrowser.R
0732b6b8d0abaf50f6fc9a8b9537e634 *doc/v05.ucscTableBrowser.Rmd
7d610d141f03d7ddd5b012d6ec6a7f8a *doc/v05.ucscTableBrowser.html
8c3089cd240b9e1613d44f45fb5f051c *doc/v06.annotationHub.R
cab46c8e5e204c88d95e33a063001613 *doc/v06.annotationHub.Rmd
8c971e259d47eced17cb7672367a8937 *doc/v06.annotationHub.html
9a3d752c2a0e8a1343cb7dc1b0f579c4 *doc/v07.gwas.R
8a49d6c3a6fd30f70d025d5f662e2ed8 *doc/v07.gwas.Rmd
d848cfceb0fa10999428ca4f1173bc3a *doc/v07.gwas.html
a1baf4d70a828bfbe4589f1018be5d20 *extdata/GRCh38.94.NDUFS2.gff3
75a384c9304e32454306bb727814c343 *extdata/GSM749704_hg19_chr19_128M.bam
1a9a98b6678fca846a8144c4ae6ac80e *extdata/GSM749704_hg19_chr19_128M.bam.bai
c5bccec39d0caf9a071c182a11ac09fe *extdata/GSM749704_hg19_chr19_narrowPeaks_subset.RData
48c889aef7a6b60c75fc339f942f5f90 *extdata/GSM749704_hg19_chr19_peaks.narrowPeak
c5bccec39d0caf9a071c182a11ac09fe *extdata/GSM749704_hg19_chr19_subset.RData
8bd47320586abca597f3432362e6a7a5 *extdata/carolin.gwas
2734a4c2cb89bf2666a0069c6c736c05 *extdata/ctcf-gata2/gata2-region-h3k4me3.bw
43a94471b2ae2498c0828747cec9c359 *extdata/ctcf-gata2/gata2-region-hg19.bam
0cd684dd9613d157738a2a3513511148 *extdata/ctcf-gata2/gata2-region-hg19.bam.bai
c5bccec39d0caf9a071c182a11ac09fe *extdata/ctcf-gata2/gata2-region-macs2-narrowPeaks.RData
36ee0ee64c50aa0807fb42ae47bcaf26 *extdata/gm12878_loops.bedpe.gz
26668d541c93305d85e7cfb60d6a3535 *extdata/gwas-3k-clean.RData
8e344e9497cc46bcb1e79a2c2549ab91 *extdata/gwas-5k.tsv
b6dc68b393cbb0277bda6a2f8bfbe155 *extdata/gwas/alzheimerSubsetOfGWASCatatalog-29apr2022.RData
8847b6f05760aa6a0917a89613c46f51 *extdata/gwas/ampad.eqtl.ndufs2.RData
88f68814e29c59193903309302102bb6 *extdata/gwas/bellenguez.bed
5d100f8455088ea98af9c03413f5f933 *extdata/gwas/bellenguez.gwas
8bd47320586abca597f3432362e6a7a5 *extdata/gwas/carolin.gwas
2ccbeeea002db298787f7718692ff56c *extdata/gwas/deelan99.gwas
f3b310e4d2a64a9dfc64ce0e37d350e1 *extdata/k562-h3k4me3-gata2.tsv
1ee9095c3749ef58b78d8aebbf3ca5db *extdata/mef2c-4kb.vcf
8c392003503b8e6ff077b3fdf6d0c51b *extdata/mm10-sample.bw
861acb68c5cbe49323f856f11bf8994c *extdata/ndufs2-hg38.gff3
00e46344b23cb6b61a8e46130d49312f *extdata/psg1.bam
52b6f24558fbc9818f406395e7c7a87e *extdata/psg1.bam.bai
c013c37e4f1e7c1786bb3c82ab761cd9 *extdata/sarsGenome/README.txt
2b50465a864d11f01c986366db94662f *extdata/sarsGenome/Sars_cov_2.ASM985889v3.101.gff3
b98334cd0015ee1b1d2dc3b9d81b325e *extdata/sarsGenome/Sars_cov_2.ASM985889v3.dna.toplevel.fa
94a846eaeacd1dfd324b2a312f281d94 *extdata/sarsGenome/Sars_cov_2.ASM985889v3.dna.toplevel.fa.fai
8327ea48ae39508c789b2b05c93828ce *extdata/sixColumn-demo1.bedpe
02172fd755a86ddfaaf02f1e67c22953 *extdata/tbl.mef2cGWAS.variants.RData
60bf5c74f07ef04082032b2de9bf57dc *extdata/tbl.with.MotifDbNames.Rdata
e6d4feceb4b466656e998b7ea69d2091 *extdata/tenColumn-demo2.bedpe
d4a76447211995522a8951918df56dc2 *extdata/tumor.bam
bf423a794aaaf141a94382acf964fb98 *extdata/tumor.bam.bai
d2ea93d354bbc9f7a22893eb1babe657 *help/AnIndex
d8fba0ec34a78ae20b9d2c6d04757a47 *help/aliases.rds
ef4b816f2a224c38e8ae635f779c958b *help/igvR.rdb
a0f3b1ca7a38f9408b377017801ba99f *help/igvR.rdx
ff8281ada4dfe2aa80fa365e67dd6faf *help/paths.rds
02fb8201eac810cde7fab137341eb303 *html/00Index.html
8b9362669af13540a86a3ac6cf22f99d *html/R.css
3722a9baa218c277002597b1e194f799 *unitTests/childrensDemo.R
8433df28eb9e345af8a985ab89594a46 *unitTests/igvR-vignette.R
0a9781997f1413b63cd2035e3c1fcd00 *unitTests/remoteAlignmentTrackDemo.R
27f421cb315e51a418dace433c2c468a *unitTests/test_Tracks.R
c7994aa091f2abd7b16efe6f1478b1d4 *unitTests/test_genomeSpec.R
37b464ec802e738c1817edf3f67266b8 *unitTests/test_igvR.R
bab2f1e7925badfec33dcced3ed3cf91 *unitTests/test_setCustomGenome.R
