BedpeInteractionsTrack-class
                        Constructor for BedpeInteractionsTrack
DataFrameAnnotationTrack-class
                        Constructor for DataFrameAnnotationTrack
DataFrameQuantitativeTrack-class
                        Constructor for DataFrameQuantitativeTrack
GFF3Track-class         Constructor for GFF3Track
GRangesAnnotationTrack-class
                        Constructor for GRangesAnnotationTrack
GRangesQuantitativeTrack-class
                        Constructor for GRangesQuantitativeTrack
GWASTrack-class         Constructor for GWASTrack
GWASUrlTrack            Constructor for GWASUrlTrack
GenomicAlignmentTrack-class
                        Constructor for GenomicAlignmentTrack
QuantitativeTrack-class
                        Constructor for QuantitativeTrack
RemoteAlignmentTrack-class
                        Constructor for RemoteAlignmentTrack
Track-class             Constructor for Track
UCSCBedAnnotationTrack-class
                        Constructor for UCSCBedAnnotationTrack
UCSCBedGraphQuantitativeTrack-class
                        Constructor for UCSCBedGraphQuantitativeTrack
VariantTrack-class      Constructor for VariantTrack
currently.supported.stock.genomes
                        currently.supported.stock.genomes
displayTrack,igvR-method
                        display the specified track in igv
enableMotifLogoPopups,igvR-method
                        turn mottif log popups on or off
getGenomicRegion,igvR-method
                        Obtain the chromosome and coordiates of the
                        currently displayed genomic region.
getSupportedGenomes,igvR-method
                        Get the shorthand codes (eg, "hg38") for the
                        genomes currently supported by our use of
                        igv.js
getTrackNames,igvR-method
                        Get the names of all the tracks currently
                        displayed in igv
igvAnnotationTrack-class
                        Constructor for igvAnnotationTrack
igvR-class              Create an igvR object
parseAndValidateGenomeSpec
                        parseAndValidateGenomeSpec
ping,igvR-method        Test the connection between your R session and
                        the webapp
removeTracksByName,igvR-method
                        Remove named tracks
saveToSVG,igvR-method   Get entire igv browser image in svg
setCustomGenome,igvR-method
                        Specify the reference genome you wish to use,
                        via full specification of all urls
setGenome,igvR-method   Specify the reference genome, currently limited
                        to hg38, hg19, mm10, tair10.
setTrackClickFunction,igvR-method
                        Specify (supply) the javascript function run on
                        track click event
setTrackHeight,igvR-method
                        Remove named tracks
showGenomicRegion,igvR-method
                        Set the visible region, by explicit chromLoc
                        string, or by named features in any curently
                        loaded annotation tracks
showTrackLabels,igvR-method
                        Hide or show igv track labels
trackInfo,Track-method
                        Get basic info about a track: its type, file
                        format, source and S4 class name
trackSize,BedpeInteractionsTrack-method
                        Retrieve the size of the BedpeInteractionsTrack
trackSize,DataFrameAnnotationTrack-method
                        Retrieve the size of the
                        DataFrameAnnotationTrack
trackSize,DataFrameQuantitativeTrack-method
                        Retrieve the size of the
                        DataFrameQuantitativeTrack
trackSize,GFF3Track-method
                        Retrieve the size of the GFF3Track
trackSize,GRangesAnnotationTrack-method
                        Retrieve the size of the GRangesAnnotationTrack
trackSize,GRangesQuantitativeTrack-method
                        Retrieve the size of the
                        GRangesQuantitativeTrack
trackSize,GWASTrack-method
                        Retrieve the size of the GWASTrack
trackSize,GWASUrlTrack-method
                        Retrieve the size of the GWASUrlTrack
trackSize,GenomicAlignmentTrack-method
                        Retrieve the size of the GenomicAlignmentTrack
trackSize,QuantitativeTrack-method
                        Retrieve the size of the QuantitativeTrack
trackSize,UCSCBedAnnotationTrack-method
                        Retrieve the size of theUCSCBedAnnotationTrack
trackSize,UCSCBedGraphQuantitativeTrack-method
                        Retrieve the size of the
                        UCSCBedGraphQuantitativeTrack
trackSize,VariantTrack-method
                        Retrieve the size of the VariantTrack
url.exists              url.exists
zoomIn,igvR-method      zoom the genome view in by a factor of 2
zoomOut,igvR-method     zoom the genome view out by a factor of 2
