Package: metapone
Type: Package
Title: Conducts pathway test of metabolomics data using a weighted
        permutation test
Version: 1.14.0
Date: 2022-8-20
Authors@R: c(
	person("Leqi", "Tian", role="aut"),
    person("Tianwei", "Yu", role="aut"),
    person("Tianwei", "Yu", email="yutianwei@cuhk.edu.cn", role="cre"))
Description: The package conducts pathway testing from untargetted metabolomics data. It requires the user to supply feature-level test results, from case-control testing, regression, or other suitable feature-level tests for the study design. Weights are given to metabolic features based on how many metabolites they could potentially match to. The package can combine positive and negative mode results in pathway tests.
Depends: R (>= 4.1.0), BiocParallel, fields, markdown, fdrtool, fgsea,
        ggplot2, ggrepel
Imports: methods
biocViews: Technology, MassSpectrometry, Metabolomics, Pathways
License: Artistic-2.0
LazyLoad: yes
NeedsCompilation: no
Suggests: rmarkdown, knitr
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/metapone
git_branch: RELEASE_3_21
git_last_commit: a5091dd
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Packaged: 2025-04-16 02:05:31 UTC; biocbuild
Author: Leqi Tian [aut],
  Tianwei Yu [aut],
  Tianwei Yu [cre]
Maintainer: Tianwei Yu <yutianwei@cuhk.edu.cn>
Built: R 4.5.0; ; 2025-04-16 14:50:57 UTC; windows
