Package: mosdef
Title: MOSt frequently used and useful Differential Expression
        Functions
Version: 1.4.1
Authors@R: 
    c(
        person(
            given = "Leon", family = "Dammer", role = c("aut"), 
            email = "lc.dammer@gmail.com", comment = c(ORCID = "0009-0008-4132-7639")
        ),
        person(
            given = "Federico", family = "Marini", role = c("aut", "cre"), 
            email = "marinif@uni-mainz.de", comment = c(ORCID = "0000-0003-3252-7758")
        )
    )
Description: This package provides functionality to run a number of tasks in the 
    differential expression analysis workflow. This encompasses the most widely 
    used steps, from running various enrichment analysis tools with a unified interface
    to creating plots and beautifying table components linking to external websites
    and databases. This streamlines the generation of comprehensive analysis reports.
Depends: R (>= 4.4.0)
Imports: DT, ggplot2, ggforce, ggrepel, graphics, grDevices, htmltools,
        methods, AnnotationDbi, topGO, GO.db, clusterProfiler, goseq,
        utils, RColorBrewer, rlang, DESeq2, scales,
        SummarizedExperiment, S4Vectors, stats
Suggests: knitr, rmarkdown, macrophage, org.Hs.eg.db, GeneTonic,
        testthat (>= 3.0.0), TxDb.Hsapiens.UCSC.hg38.knownGene,
        BiocStyle
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
VignetteBuilder: knitr
URL: https://github.com/imbeimainz/mosdef
BugReports: https://github.com/imbeimainz/mosdef/issues
Config/testthat/edition: 3
biocViews: GeneExpression, Software, Transcription, Transcriptomics,
        DifferentialExpression, Visualization, ReportWriting,
        GeneSetEnrichment, GO
git_url: https://git.bioconductor.org/packages/mosdef
git_branch: RELEASE_3_21
git_last_commit: 1c4edfc
git_last_commit_date: 2025-05-01
Repository: Bioconductor 3.21
Date/Publication: 2025-05-01
NeedsCompilation: no
Packaged: 2025-05-02 00:59:05 UTC; biocbuild
Author: Leon Dammer [aut] (ORCID: <https://orcid.org/0009-0008-4132-7639>),
  Federico Marini [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3252-7758>)
Maintainer: Federico Marini <marinif@uni-mainz.de>
Built: R 4.5.0; ; 2025-05-02 13:55:41 UTC; windows
