Package: roastgsa
Type: Package
Version: 1.6.0
Date: 2023-06-13
Title: Rotation based gene set analysis
Authors@R: person("Adria", "Caballe", email = "adria.caballe@irbbarcelona.org",role = c("aut", "cre"), comment = c(ORCID = "0000-0002-2388-4713"))
BugReports: https://github.com/adricaba/roastgsa/issues
Description: This package implements a variety of functions useful for
             gene set analysis using rotations to approximate the
	     null distribution. It contributes with the implementation of
	     seven test statistic scores that can be used with different goals
	     and interpretations. Several functions are available to complement the statistical results
	     with graphical representations.
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: Microarray, Preprocessing, Normalization, GeneExpression,
        Survival, Transcription, Sequencing, Transcriptomics, Bayesian,
        Clustering, Regression, RNASeq, MicroRNAArray, mRNAMicroarray,
        FunctionalGenomics, SystemsBiology, ImmunoOncology,
        DifferentialExpression, GeneSetEnrichment, BatchEffect,
        MultipleComparison, QualityControl, TimeCourse, Metabolomics,
        Proteomics, Epigenetics, Cheminformatics, ExonArray,
        OneChannel, TwoChannel, ProprietaryPlatforms, CellBiology,
        BiomedicalInformatics, AlternativeSplicing,
        DifferentialSplicing, DataImport, Pathways
Depends: R (>= 4.3.0)
Imports: parallel, grDevices, graphics, utils, stats, methods, grid,
        RColorBrewer, gplots, ggplot2, limma, Biobase
Suggests: BiocStyle, knitr, rmarkdown, GSEABenchmarkeR,
        EnrichmentBrowser, preprocessCore, DESeq2
License: GPL-3
git_url: https://git.bioconductor.org/packages/roastgsa
git_branch: RELEASE_3_21
git_last_commit: ee4fda3
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:20:33 UTC; biocbuild
Author: Adria Caballe [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-2388-4713>)
Maintainer: Adria Caballe <adria.caballe@irbbarcelona.org>
Built: R 4.5.0; ; 2025-04-16 15:22:11 UTC; windows
