scDiagnostics-package	scDiagnostics-package
adjustPValues	adjustPValues
argumentCheck	argumentCheck
boxplotPCA	boxplotPCA
calculateAveragePairwiseCorrelation	calculateAveragePairwiseCorrelation
calculateCategorizationEntropy	calculateCategorizationEntropy
calculateCellDistances	calculateCellDistances
calculateCellDistancesSimilarity	calculateCellDistancesSimilarity
calculateCellSimilarityPCA	calculateCellSimilarityPCA
calculateCramerPValue	calculateCramerPValue
calculateDiscriminantSpace	calculateDiscriminantSpace
calculateHotellingPValue	calculateHotellingPValue
calculateHVGOverlap	calculateHVGOverlap
calculateNearestNeighborProbabilities	calculateNearestNeighborProbabilities
calculateSIRSpace	calculateSIRSpace
calculateVarImpOverlap	calculateVarImpOverlap
calculateWassersteinDistance	calculateWassersteinDistance
calculate_entropy	calculate_entropy
compareCCA	compareCCA
comparePCA	comparePCA
comparePCASubspace	comparePCASubspace
conditionalMeans	conditionalMeans
detectAnomaly	detectAnomaly
generateColors	generateColors
histQCvsAnnotation	histQCvsAnnotation
hotellingT2	hotellingT2
inverse_normal_trans	inverse_normal_trans
ledoitWolf	ledoitWolf
n_elements	n_elements
plot.calculateAveragePairwiseCorrelationObject	calculateAveragePairwiseCorrelation
plot.calculateCellDistancesObject	calculateCellDistances
plot.calculateCellSimilarityPCAObject	calculateCellSimilarityPCA
plot.calculateDiscriminantSpaceObject	calculateDiscriminantSpace
plot.calculateNearestNeighborProbabilitiesObject	calculateNearestNeighborProbabilities
plot.calculateSIRSpaceObject	calculateSIRSpace
plot.calculateWassersteinDistanceObject	plot.calculateWassersteinDistanceObject
plot.compareCCAObject	compareCCA
plot.comparePCAObject	comparePCA
plot.comparePCASubspaceObject	comparePCASubspace
plot.detectAnomalyObject	detectAnomaly
plot.regressPCObject	regressPC
plotCellTypeMDS	plotCellTypeMDS
plotCellTypePCA	plotCellTypePCA
plotGeneExpressionDimred	plotGeneExpressionDimred
plotGeneSetScores	plotGeneSetScores
plotMarkerExpression	plotMarkerExpression
plotPairwiseDistancesDensity	plotPairwiseDistancesDensity
plotQCvsAnnotation	plotQCvsAnnotation
projectPCA	projectPCA
projectSIR	projectSIR
qc_data	qc_data
query_data	query_data
reference_data	reference_data
regressPC	regressPC
scDiagnostics	scDiagnostics-package
