Package: scHiCcompare
Title: Differential Analysis of Single-cell Hi-C Data
Version: 1.0.0
Authors@R: c(
    person(given = "My", family = "Nguyen",
           email = "hamy.12398@gmail.com",
           role = c("aut", "cre"),
           comment = c(ORCID = "0009-0003-1118-7085")),
    person(given = "Mikhail",
           family = "Dozmorov",
           role = c("aut"),
           email = "mikhail.dozmorov@gmail.com",
           comment = c(ORCID = "0000-0002-0086-8358")))
Description: This package provides functions for differential chromatin 
    interaction analysis between two single-cell Hi-C data groups. It includes
    tools for imputation, normalization, and differential analysis of chromatin
    interactions. The package implements pooling techniques for imputation and 
    offers methods to normalize and test for differential interactions across 
    single-cell Hi-C datasets.
Imports: grDevices, graphics, stats, utils, dplyr, ggplot2, gtools,
        HiCcompare, lattice, mclust, mice, miceadds, ranger, rstatix,
        tidyr, rlang, data.table, BiocParallel
Suggests: knitr, rmarkdown, testthat, BiocStyle, DT, gridExtra
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
Depends: R (>= 4.5.0)
VignetteBuilder: knitr
biocViews: Software, SingleCell, HiC, Sequencing, Normalization
BugReports: https://github.com/dozmorovlab/ScHiCcompare/issues
URL: https://github.com/dozmorovlab/ScHiCcompare
git_url: https://git.bioconductor.org/packages/scHiCcompare
git_branch: RELEASE_3_21
git_last_commit: f82a297
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:32:27 UTC; biocbuild
Author: My Nguyen [aut, cre] (ORCID: <https://orcid.org/0009-0003-1118-7085>),
  Mikhail Dozmorov [aut] (ORCID: <https://orcid.org/0000-0002-0086-8358>)
Maintainer: My Nguyen <hamy.12398@gmail.com>
Built: R 4.5.0; ; 2025-04-16 15:27:56 UTC; windows
