Package: scTreeViz
Type: Package
Title: R/Bioconductor package to interactively explore and visualize
        single cell RNA-seq datasets with hierarhical annotations
Version: 1.14.1
Authors@R: c( 
          person("Jayaram", "Kancherla", email="jayaram.kancherla@gmail.com", role=c("aut", "cre")),
          person("Hector", "Corrada Bravo", email="hcorrada@gmail.com", role=c("aut")),
          person("Kazi Tasnim", "Zinat", email="kzintas@umd.edu", role=c("aut")),
          person("Stephanie", "Hicks", email="shicks19@jhu.edu", role=c("aut"))
          )
Description: scTreeViz provides classes to support interactive data
          aggregation and visualization of single cell RNA-seq datasets with hierarchies for e.g. cell
          clusters at different resolutions. The `TreeIndex` class 
          provides methods to manage hierarchy and split the tree at a given resolution or
          across resolutions. The `TreeViz` class extends `SummarizedExperiment` 
          and can performs quick aggregations on the count matrix defined by clusters.
License: Artistic-2.0
Depends: R (>= 4.0), methods, epivizr, SummarizedExperiment
Imports: data.table, S4Vectors, digest, Matrix, Rtsne, httr, igraph,
        clustree, scran, sys, epivizrData, epivizrServer, ggraph,
        scater, Seurat, SingleCellExperiment, ggplot2, stats, utils
Suggests: knitr, BiocStyle, testthat, SC3, scRNAseq, rmarkdown, msd16s,
        metagenomeSeq, epivizrStandalone, GenomeInfoDb
VignetteBuilder: knitr
biocViews: Visualization, Infrastructure, GUI, SingleCell
Encoding: UTF-8
Collate: 'TreeIndex-class.R' 'TreeIndex-methods.R' 'TreeViz-class.R'
        'TreeViz-methods.R' 'startTreeViz.R' 'TreeVizApp-class.R'
        'EpivizTreeData-class.R' 'helper-functions.R'
        'ClusterHierarchy-class.R'
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/scTreeViz
git_branch: RELEASE_3_21
git_last_commit: ef6773d
git_last_commit_date: 2025-05-08
Repository: Bioconductor 3.21
Date/Publication: 2025-05-08
NeedsCompilation: no
Packaged: 2025-05-09 02:26:44 UTC; biocbuild
Author: Jayaram Kancherla [aut, cre],
  Hector Corrada Bravo [aut],
  Kazi Tasnim Zinat [aut],
  Stephanie Hicks [aut]
Maintainer: Jayaram Kancherla <jayaram.kancherla@gmail.com>
Built: R 4.5.0; ; 2025-05-09 14:00:42 UTC; windows
