Package: seqCAT
Title: High Throughput Sequencing Cell Authentication Toolkit
Version: 1.30.0
Authors@R: person("Erik", "Fasterius", email = "erik.fasterius@outlook.com",
    role = c("aut", "cre"))
Description: The seqCAT package uses variant calling data (in the
    form of VCF files) from high throughput sequencing technologies to
    authenticate and validate the source, function and characteristics of
    biological samples used in scientific endeavours.
Depends: R (>= 3.6), GenomicRanges (>= 1.26.4), VariantAnnotation(>=
        1.20.3)
Imports: dplyr (>= 0.5.0), GenomeInfoDb (>= 1.13.4), ggplot2 (>=
        2.2.1), grid (>= 3.5.0), IRanges (>= 2.8.2), methods,
        rtracklayer, rlang, scales (>= 0.4.1), S4Vectors (>= 0.12.2),
        stats, SummarizedExperiment (>= 1.4.0), tidyr (>= 0.6.1), utils
Suggests: knitr, BiocStyle, rmarkdown, testthat, BiocManager
biocViews: Coverage, GenomicVariation, Sequencing, VariantAnnotation
License: MIT + file LICENCE
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.1.1
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/seqCAT
git_branch: RELEASE_3_21
git_last_commit: 5a3cc85
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-16 03:42:22 UTC; biocbuild
Author: Erik Fasterius [aut, cre]
Maintainer: Erik Fasterius <erik.fasterius@outlook.com>
Built: R 4.5.0; ; 2025-04-16 15:30:39 UTC; windows
